PDB entry 3ugb

View 3ugb on RCSB PDB site
Description: UbcH5c~Ubiquitin Conjugate
Class: ligase/protein binding
Keywords: E2 ubiquitin-conjugating enzyme, ubiquitin, Ubl conjugation pathway, oxyester bond, ubiquitin-protein ligase activity, LIGASE-PROTEIN BINDING complex
Deposited on 2011-11-02, released 2012-05-16
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-11-14, with a file datestamp of 2012-11-09.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.213
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin-conjugating enzyme E2 D3
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC5C, UBCH5C, UBE2D2, UBE2D3
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61077 (Start-146)
      • engineered mutation (84)
    Domains in SCOPe 2.06: d3ugba_
  • Chain 'B':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ugbb_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ugbA (A:)
    malkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfptdy
    pfkppkvafttriyhpninsngsisldilrsqwspaltiskvllsicsllcdpnpddplv
    peiariyktdrdkynrisrewtqkyam
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ugbA (A:)
    alkrinkelsdlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfptdyp
    fkppkvafttriyhpninsngsisldilrsqwspaltiskvllsicsllcdpnpddplvp
    eiariyktdrdkynrisrewtqkyam
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3ugbB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg