PDB entry 3ud4

View 3ud4 on RCSB PDB site
Description: The C92U mutant c-di-GMP-I riboswitch bound to GpA
Class: signaling protein/RNA
Keywords: riboswitch, SIGNALING PROTEIN-RNA complex
Deposited on 2011-10-27, released 2012-01-04
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-10-17, with a file datestamp of 2012-10-12.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.225
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: RNA (5'-r(*gp*a)-3')
  • Chain 'P':
    Compound: U1 small nuclear ribonucleoprotein A
    Species: Homo sapiens [TaxId:9606]
    Gene: SNRPA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P09012
      • engineered mutation (30)
      • engineered mutation (35)
    Domains in SCOPe 2.05: d3ud4p_
  • Chain 'R':
    Compound: RNA (92-mer)
    Species: synthetic, synthetic
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'B':
    No sequence available.

  • Chain 'P':
    Sequence, based on SEQRES records: (download)
    >3ud4P (P:)
    mavpetrpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifk
    evssatnalrsmqgfpfydkpmriqyaktdsdiiakmk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ud4P (P:)
    rpnhtiyinnlnekikkdelkkslhaifsrfgqildilvsrslkmrgqafvifkevssat
    nalrsmqgfpfydkpmriqyaktdsdi
    

  • Chain 'R':
    No sequence available.