SCOPe 2.07: Structural Classification of Proteins

PDB entry 3u5e

View 3u5e on RCSB PDB site
Description: The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains proteins of the 60S subunit, ribosome A
Class: ribosome
Keywords: translation, ribosome, 40S, 60S, 80S, ribosomal, ribosomal RNA, rRNA, ribosomal protein, STM1, eukaryotic ribosome, RNA-protein complex
Deposited on 2011-10-11, released 2011-12-21
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.182
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: 60S ribosomal protein L2-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX45
Domains in SCOPe 2.07: d3u5ea_
Chain 'B':
Compound: 60S Ribosomal protein L3
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P14126 (Start-386)
Domains in SCOPe 2.07: d3u5eb_
Chain 'C':
Compound: 60S ribosomal protein L4-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P10664 (Start-361)
Domains in SCOPe 2.07: d3u5ec_
Chain 'D':
Compound: 60S Ribosomal protein L5
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P26321 (Start-296)
Domains in SCOPe 2.07: d3u5ed_
Chain 'E':
Compound: 60S ribosomal protein L6-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot Q02326 (Start-175)
Domains in SCOPe 2.07: d3u5ee_
Chain 'F':
Compound: 60S ribosomal protein L7-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05737 (Start-243)
Domains in SCOPe 2.07: d3u5ef_
Chain 'G':
Compound: 60S ribosomal protein L8-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P17076 (Start-255)
Domains in SCOPe 2.07: d3u5eg_
Chain 'H':
Compound: 60S ribosomal protein L9-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05738 (0-190)
Domains in SCOPe 2.07: d3u5eh_
Chain 'I':
Compound: 60S ribosomal protein L10
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P41805 (Start-220)
Domains in SCOPe 2.07: d3u5ei_
Chain 'J':
Compound: 60S ribosomal protein L11-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C0W9 (Start-173)
Domains in SCOPe 2.07: d3u5ej_
Chain 'L':
Compound: 60S ribosomal protein L13-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot Q12690
Domains in SCOPe 2.07: d3u5el_
Chain 'M':
Compound: 60S ribosomal protein L14-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P36105 (Start-137)
Domains in SCOPe 2.07: d3u5em_
Chain 'N':
Compound: 60S ribosomal protein L15-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05748 (Start-203)
Domains in SCOPe 2.07: d3u5en_
Chain 'O':
Compound: 60S ribosomal protein L16-A, 60S ribosomal protein L16-B
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P26784 (Start-198)
- Uniprot P26785 (Start-198)
Domains in SCOPe 2.07: d3u5eo_
Chain 'P':
Compound: 60S ribosomal protein L17-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05740 (Start-183)
Domains in SCOPe 2.07: d3u5ep_
Chain 'Q':
Compound: 60S ribosomal protein L18-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX49 (Start-185)
Domains in SCOPe 2.07: d3u5eq_
Chain 'R':
Compound: 60S ribosomal protein L19-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX82 (Start-188)
Domains in SCOPe 2.07: d3u5er_
Chain 'S':
Compound: 60S ribosomal protein L20-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX23 (0-171)
Domains in SCOPe 2.07: d3u5es_
Chain 'T':
Compound: 60S ribosomal protein L21-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot Q02753 (Start-159)
Domains in SCOPe 2.07: d3u5et_
Chain 'U':
Compound: 60S ribosomal protein L22-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05749
Domains in SCOPe 2.07: d3u5eu_
Chain 'V':
Compound: 60S ribosomal protein L23-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX41 (Start-136)
Domains in SCOPe 2.07: d3u5ev_
Chain 'W':
Compound: 60S ribosomal protein L24-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P04449 (0-End)
Domains in SCOPe 2.07: d3u5ew_
Chain 'X':
Compound: 60S ribosomal protein L25
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P04456 (Start-141)
Domains in SCOPe 2.07: d3u5ex_
Chain 'Y':
Compound: 60S ribosomal protein L26-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05743 (Start-126)
Domains in SCOPe 2.07: d3u5ey_
Chain 'Z':
Compound: 60S ribosomal protein L27-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C2H6 (Start-135)
Domains in SCOPe 2.07: d3u5ez_
Chain 'a':
Compound: 60S ribosomal protein L28
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P02406 (Start-148)
Chain 'b':
Compound: 60S ribosomal protein L29
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05747 (Start-58)
Chain 'c':
Compound: 60s ribosomal protein l30
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P14120 (Start-104)
Chain 'd':
Compound: 60s ribosomal protein l31-a
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C2H8
Chain 'e':
Compound: 60S Ribosomal protein L32
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P38061
Chain 'f':
Compound: 60S ribosomal protein L33-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05744 (Start-106)
Chain 'g':
Compound: 60S ribosomal protein L34-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P87262
Chain 'h':
Compound: 60S ribosomal protein L35-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX84 (Start-119)
Chain 'i':
Compound: 60S ribosomal protein L36-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05745 (Start-99)
Chain 'j':
Compound: 60S ribosomal protein L37-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P49166 (Start-87)
Chain 'k':
Compound: 60S ribosomal protein L38
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P49167 (Start-77)
Chain 'l':
Compound: 60S ribosomal protein L39
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P04650 (Start-50)
Chain 'm':
Compound: 60S ribosomal protein L40
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CH08 (Start-127)
Chain 'n':
Compound: 60S ribosomal protein L41-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX86 (0-24)
Chain 'o':
Compound: 60S ribosomal protein L42-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX27 (Start-105)
Chain 'p':
Compound: 60S ribosomal protein L43-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX25 (Start-91)
Heterogens: ZN

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>3u5eA (A:)
mgrvirnqrkgagsiftshtrlrqgaaklrtldyaerhgyirgivkqivhdsgrgaplak
vvfrdpykyrlreeifianegvhtgqfiyagkkaslnvgnvlplgsvpegtivsnveekp
gdrgalarasgnyviiighnpdenktrvrlpsgakkvissdargvigviagggrvdkpll
kagrafhkyrlkrnswpktrgvamnpvdhphgggnhqhigkastisrgavsgqkagliaa
rrtgllrgsqktqd