SCOPe 2.05: Structural Classification of Proteins

PDB entry 3u5c

View 3u5c on RCSB PDB site
Description: The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains proteins of the 40S subunit, ribosome A
Class: ribosome
Keywords: Translation, ribosome, 40S, 60S, 80S, ribosomal, ribosomal RNA, rRNA, ribosomal protein, STM1, eukaryotic ribosome, RNA-protein complex
Deposited on 2011-10-11, released 2011-12-21
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.182
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: 40S ribosomal protein S0-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P32905
Domains in SCOPe 2.05: d3u5ca_
Chain 'B':
Compound: 40S ribosomal protein S1-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P33442
Domains in SCOPe 2.05: d3u5cb_
Chain 'C':
Compound: 40S ribosomal protein S2
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P25443
Domains in SCOPe 2.05: d3u5cc_
Chain 'D':
Compound: 40S ribosomal protein S3
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05750
Domains in SCOPe 2.05: d3u5cd_
Chain 'E':
Compound: 40S ribosomal protein S4-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX35 (Start-260)
Domains in SCOPe 2.05: d3u5ce_
Chain 'F':
Compound: 40S ribosomal protein S5
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P26783 (Start-224)
Domains in SCOPe 2.05: d3u5cf_
Chain 'G':
Compound: 40S ribosomal protein S6-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX37 (0-End)
Domains in SCOPe 2.05: d3u5cg_
Chain 'H':
Compound: 40S ribosomal protein S7-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P26786
Domains in SCOPe 2.05: d3u5ch_
Chain 'I':
Compound: 40S ribosomal protein S8-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX39 (Start-199)
Domains in SCOPe 2.05: d3u5ci_
Chain 'J':
Compound: 40S ribosomal protein S9-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot O13516
Domains in SCOPe 2.05: d3u5cj_
Chain 'K':
Compound: 40S ribosomal protein S10-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot Q08745 (0-End)
Domains in SCOPe 2.05: d3u5ck_
Chain 'L':
Compound: 40S ribosomal protein S11-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX47 (Start-155)
Domains in SCOPe 2.05: d3u5cl_
Chain 'M':
Compound: 40s ribosomal protein s12
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P48589 (Start-142)
Domains in SCOPe 2.05: d3u5cm_
Chain 'N':
Compound: 40S ribosomal protein S13
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05756 (Start-150)
Domains in SCOPe 2.05: d3u5cn_
Chain 'O':
Compound: 40S ribosomal protein S14-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P06367 (Start-136)
Domains in SCOPe 2.05: d3u5co_
Chain 'P':
Compound: 40S ribosomal protein S15
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot Q01855
Domains in SCOPe 2.05: d3u5cp_
Chain 'Q':
Compound: 40S ribosomal protein S16-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX51 (Start-142)
Domains in SCOPe 2.05: d3u5cq_
Chain 'R':
Compound: 40S ribosomal protein S17-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P02407
Domains in SCOPe 2.05: d3u5cr_
Chain 'S':
Compound: 40S ribosomal protein S18-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX55 (Start-145)
Domains in SCOPe 2.05: d3u5cs_
Chain 'T':
Compound: 40S ribosomal protein S19-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P07280 (Start-143)
Domains in SCOPe 2.05: d3u5ct_
Chain 'U':
Compound: 40S ribosomal protein S20
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P38701 (Start-120)
Domains in SCOPe 2.05: d3u5cu_
Chain 'V':
Compound: 40S ribosomal protein S21-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C0V8 (0-86)
Domains in SCOPe 2.05: d3u5cv_
Chain 'W':
Compound: 40S ribosomal protein S22-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C0W1 (Start-129)
Domains in SCOPe 2.05: d3u5cw_
Chain 'X':
Compound: 40S ribosomal protein S23-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX29 (Start-144)
Domains in SCOPe 2.05: d3u5cx_
Chain 'Y':
Compound: 40S ribosomal protein S24-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX31 (Start-134)
Domains in SCOPe 2.05: d3u5cy_
Chain 'Z':
Compound: 40S ribosomal protein S25-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot Q3E792
Domains in SCOPe 2.05: d3u5cz_
Chain 'a':
Compound: 40S ribosomal protein S26-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P39938
Chain 'b':
Compound: 40S ribosomal protein S27-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P35997 (Start-81)
Chain 'c':
Compound: 40S ribosomal protein S28-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot Q3E7X9 (Start-66)
Chain 'd':
Compound: 40S ribosomal protein S29-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P41057 (Start-55)
Chain 'e':
Compound: 40S ribosomal protein S30-A
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P0CX33
Chain 'f':
Compound: 40S ribosomal protein S31
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P05759 (Start-151)
  - see remark 999 (81-100)
Chain 'g':
Compound: Guanine nucleotide-binding protein subunit beta-like protein (ASC1, RACK1)
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P38011 (Start-318)
Chain 'h':
Compound: Suppressor protein STM1
Species: Saccharomyces cerevisiae [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P39015
  - see remark 999 (8-19)
  - see remark 999 (150-175)
Heterogens: ZN

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>3u5cA (A:)
mslpatfdltpedaqlllaanthlgarnvqvhqepyvfnarpdgvhvinvgktweklvla
ariiaaipnpedvvaissrtfgqravlkfaahtgatpiagrftpgsftnyitrsfkeprl
vivtdprsdaqaikeasyvnipvialtdldspsefvdvaipcnnrgkhsigliwyllare
vlrlrgalvdrtqpwsimpdlyfyrdpeeveqqvaeeatteeageeeakeevteeqaeat
ewaeenadnvew