PDB entry 3u4j

View 3u4j on RCSB PDB site
Description: Crystal structure of NAD-dependent aldehyde dehydrogenase from Sinorhizobium meliloti
Class: oxidoreductase
Keywords: PSI-Biology, NYSGRC, Structural Genomics, New York Structural Genomics Research Consortium, tetramer, NAD, OXIDOREDUCTASE
Deposited on 2011-10-08, released 2011-10-19
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-10-19, with a file datestamp of 2011-10-14.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.189
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NAD-dependent aldehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:382]
    Gene: RA0117, SMa0220
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q930S8 (2-505)
      • expression tag (1)
    Domains in SCOPe 2.04: d3u4ja_
  • Chain 'B':
    Compound: NAD-dependent aldehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:382]
    Gene: RA0117, SMa0220
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3u4jb_
  • Chain 'C':
    Compound: NAD-dependent aldehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:382]
    Gene: RA0117, SMa0220
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q930S8 (2-505)
      • expression tag (1)
    Domains in SCOPe 2.04: d3u4jc_
  • Chain 'D':
    Compound: NAD-dependent aldehyde dehydrogenase
    Species: Sinorhizobium meliloti [TaxId:382]
    Gene: RA0117, SMa0220
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3u4jd_
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3u4jA (A:)
mvmlsnfiapdsndprlriksryqmlvdgksvdaasgstidrvspghagevvgtwpeasa
ddvrkavaaarkafdagpwprmsgaersrlmfkvadlilarqeelalieslevgkpiaqa
rgeigfcadlwsyaagqaralegqthnnigddrlglvlrepvgvvgiitpwnfpfiiase
rvpwaigsgctvvlkpseftsgtsirlaelareagipdgvfnvvtgygdpagqvlaedpn
vdmvaftgsvrvgtklgeiaartvkrvglelggkgpqivfadadldaaadgiaygvyhna
gqccisgsrllvqegirdalmerlldisrkvafgdplnertkigamiseahaekvhsyvt
agitsgaelllggerigreaglyyaptvfagvtpdmsiareeifgpvlstltfktadeav
alanatefglsasvwstnletalqtirriragrcwinsvidgtpelpiggykksglgrel
grygfdeysqfkgvhvtlgrpapwftaenlyfqshhhhhhwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3u4jA (A:)
vmlsnfiapdsndprlriksryqmlvdgksvdaasgstidrvspghagevvgtwpeasad
dvrkavaaarkafdagpwprmsgaersrlmfkvadlilarqeelalieslevgkpiaqar
geigfcadlwsyaagqaralegqthnnigddrlglvlrepvgvvgiitpwnfpfiiaser
vpwaigsgctvvlkpseftsgtsirlaelareagipdgvfnvvtgygdpagqvlaedpnv
dmvaftgsvrvgtklgeiaartvkrvglelggkgpqivfadadldaaadgiaygvyhnag
qccisgsrllvqegirdalmerlldisrkvafgdplnertkigamiseahaekvhsyvta
gitsgaelllggerigreaglyyaptvfagvtpdmsiareeifgpvlstltfktadeava
lanatefglsasvwstnletalqtirriragrcwinsvidgtpelpiggykksglgrelg
rygfdeysqfkgvhvtlgrpapwft

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3u4jB (B:)
mvmlsnfiapdsndprlriksryqmlvdgksvdaasgstidrvspghagevvgtwpeasa
ddvrkavaaarkafdagpwprmsgaersrlmfkvadlilarqeelalieslevgkpiaqa
rgeigfcadlwsyaagqaralegqthnnigddrlglvlrepvgvvgiitpwnfpfiiase
rvpwaigsgctvvlkpseftsgtsirlaelareagipdgvfnvvtgygdpagqvlaedpn
vdmvaftgsvrvgtklgeiaartvkrvglelggkgpqivfadadldaaadgiaygvyhna
gqccisgsrllvqegirdalmerlldisrkvafgdplnertkigamiseahaekvhsyvt
agitsgaelllggerigreaglyyaptvfagvtpdmsiareeifgpvlstltfktadeav
alanatefglsasvwstnletalqtirriragrcwinsvidgtpelpiggykksglgrel
grygfdeysqfkgvhvtlgrpapwftaenlyfqshhhhhhwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3u4jB (B:)
lsnfiapdsndprlriksryqmlvdgksvdaasgstidrvspghagevvgtwpeasaddv
rkavaaarkafdagpwprmsgaersrlmfkvadlilarqeelalieslevgkpiaqarge
igfcadlwsyaagqaralegqthnnigddrlglvlrepvgvvgiitpwnfpfiiaservp
waigsgctvvlkpseftsgtsirlaelareagipdgvfnvvtgygdpagqvlaedpnvdm
vaftgsvrvgtklgeiaartvkrvglelggkgpqivfadadldaaadgiaygvyhnagqc
cisgsrllvqegirdalmerlldisrkvafgdplnertkigamiseahaekvhsyvtagi
tsgaelllggerigeaglyyaptvfagvtpdmsiareeifgpvlstltfktadeavalan
atefglsasvwstnletalqtirriragrcwinsvidgtpelpiggykksglgrelgryg
fdeysqfkgvhvtlgrpapwft

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3u4jC (C:)
mvmlsnfiapdsndprlriksryqmlvdgksvdaasgstidrvspghagevvgtwpeasa
ddvrkavaaarkafdagpwprmsgaersrlmfkvadlilarqeelalieslevgkpiaqa
rgeigfcadlwsyaagqaralegqthnnigddrlglvlrepvgvvgiitpwnfpfiiase
rvpwaigsgctvvlkpseftsgtsirlaelareagipdgvfnvvtgygdpagqvlaedpn
vdmvaftgsvrvgtklgeiaartvkrvglelggkgpqivfadadldaaadgiaygvyhna
gqccisgsrllvqegirdalmerlldisrkvafgdplnertkigamiseahaekvhsyvt
agitsgaelllggerigreaglyyaptvfagvtpdmsiareeifgpvlstltfktadeav
alanatefglsasvwstnletalqtirriragrcwinsvidgtpelpiggykksglgrel
grygfdeysqfkgvhvtlgrpapwftaenlyfqshhhhhhwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3u4jC (C:)
vmlsnfiapdsndprlriksryqmlvdgksvdaasgstidrvspghagevvgtwpeasad
dvrkavaaarkafdagpwprmsgaersrlmfkvadlilarqeelalieslevgkpiaqar
geigfcadlwsyaagqaralegqthnnigddrlglvlrepvgvvgiitpwnfpfiiaser
vpwaigsgctvvlkpseftsgtsirlaelareagipdgvfnvvtgygdpagqvlaedpnv
dmvaftgsvrvgtklgeiaartvkrvglelggkgpqivfadadldaaadgiaygvyhnag
qccisgsrllvqegirdalmerlldisrkvafgdplnertkigamiseahaekvhsyvta
gitsgaelllggerigreaglyyaptvfagvtpdmsiareeifgpvlstltfktadeava
lanatefglsasvwstnletalqtirriragrcwinsvidgtpelpiggykksglgrelg
rygfdeysqfkgvhvtlgrpapwft

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3u4jD (D:)
mvmlsnfiapdsndprlriksryqmlvdgksvdaasgstidrvspghagevvgtwpeasa
ddvrkavaaarkafdagpwprmsgaersrlmfkvadlilarqeelalieslevgkpiaqa
rgeigfcadlwsyaagqaralegqthnnigddrlglvlrepvgvvgiitpwnfpfiiase
rvpwaigsgctvvlkpseftsgtsirlaelareagipdgvfnvvtgygdpagqvlaedpn
vdmvaftgsvrvgtklgeiaartvkrvglelggkgpqivfadadldaaadgiaygvyhna
gqccisgsrllvqegirdalmerlldisrkvafgdplnertkigamiseahaekvhsyvt
agitsgaelllggerigreaglyyaptvfagvtpdmsiareeifgpvlstltfktadeav
alanatefglsasvwstnletalqtirriragrcwinsvidgtpelpiggykksglgrel
grygfdeysqfkgvhvtlgrpapwftaenlyfqshhhhhhwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3u4jD (D:)
lsnfiapdsndprlriksryqmlvdgksvdaasgstidrvspghagevvgtwpeasaddv
rkavaaarkafdagpwprmsgaersrlmfkvadlilarqeelalieslevgkpiaqarge
igfcadlwsyaagqaralegqthnnigddrlglvlrepvgvvgiitpwnfpfiiaservp
waigsgctvvlkpseftsgtsirlaelareagipdgvfnvvtgygdpagqvlaedpnvdm
vaftgsvrvgtklgeiaartvkrvglelggkgpqivfadadldaaadgiaygvyhnagqc
cisgsrllvqegirdalmerlldisrkvafgdplnertkigamiseahaekvhsyvtagi
tsgaelllggerigreaglyyaptvfagvtpdmsiareeifgpvlstltfktadeavala
natefglsasvwstnletalqtirriragrcwinsvidgtpelpiggykksglgrelgry
gfdeysqfkgvhvtlgrpapwft