PDB entry 3tvm

View 3tvm on RCSB PDB site
Description: Structure of the mouse CD1d-SMC124-iNKT TCR complex
Class: immune system
Keywords: antigen presentation, glycolipid, NKT cells, IMMUNE SYSTEM
Deposited on 2011-09-20, released 2012-02-01
The last revision prior to the SCOPe 2.02 freeze date was dated 2012-02-01, with a file datestamp of 2012-01-27.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.226
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antigen-presenting glycoprotein CD1d1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1.1, CD1d, Cd1d1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: BETA-2-MICROGLOBULIN
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (Start-98)
      • variant (84)
    Domains in SCOPe 2.02: d3tvmb_
  • Chain 'C':
    Compound: Valpha14 (mouse variable domain, human constant domain)
    Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
    Gene: Valpha14 (mouse variable domain, human constant domain)
    Database cross-references and differences (RAF-indexed):
    • PDB 3TVM
  • Chain 'D':
    Compound: Vbeta8.2 (mouse variable domain, human constant domain)
    Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
    Gene: Vbeta8.2 (mouse variable domain, human constant domain)
    Database cross-references and differences (RAF-indexed):
    • PDB 3TVM (Start-240)
  • Chain 'E':
    Compound: Antigen-presenting glycoprotein CD1d1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1.1, CD1d, Cd1d1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: BETA-2-MICROGLOBULIN
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3tvmf_
  • Chain 'G':
    Compound: Valpha14 (mouse variable domain, human constant domain)
    Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
    Gene: Valpha14 (mouse variable domain, human constant domain)
    Database cross-references and differences (RAF-indexed):
    • PDB 3TVM
  • Chain 'H':
    Compound: Vbeta8.2 (mouse variable domain, human constant domain)
    Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
    Gene: Vbeta8.2 (mouse variable domain, human constant domain)
    Database cross-references and differences (RAF-indexed):
    • PDB 3TVM (Start-240)
  • Heterogens: NAG, 07P, CL, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3tvmB (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tvmB (B:)
    qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
    fyilahteftptetdtyacrvkhasmaepktvywdrdm
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3tvmF (F:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >3tvmF (F:)
    qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
    fyilahteftptetdtyacrvkhasmaepktvywdrd
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.