PDB entry 3tvm
View 3tvm on RCSB PDB site
Description: Structure of the mouse CD1d-SMC124-iNKT TCR complex
Class: immune system
Keywords: antigen presentation, glycolipid, NKT cells, IMMUNE SYSTEM
Deposited on
2011-09-20, released
2012-02-01
The last revision prior to the SCOPe 2.01 freeze date was dated
2012-02-01, with a file datestamp of
2012-01-27.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.226
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Antigen-presenting glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1.1, CD1d, Cd1d1
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: BETA-2-MICROGLOBULIN
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d3tvmb_ - Chain 'C':
Compound: Valpha14 (mouse variable domain, human constant domain)
Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
Gene: Valpha14 (mouse variable domain, human constant domain)
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Vbeta8.2 (mouse variable domain, human constant domain)
Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
Gene: Vbeta8.2 (mouse variable domain, human constant domain)
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Antigen-presenting glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1.1, CD1d, Cd1d1
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: BETA-2-MICROGLOBULIN
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d3tvmf_ - Chain 'G':
Compound: Valpha14 (mouse variable domain, human constant domain)
Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
Gene: Valpha14 (mouse variable domain, human constant domain)
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Vbeta8.2 (mouse variable domain, human constant domain)
Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
Gene: Vbeta8.2 (mouse variable domain, human constant domain)
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, 07P, CL, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3tvmB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>3tvmB (B:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3tvmF (F:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>3tvmF (F:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrd
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.