PDB entry 3to4
View 3to4 on RCSB PDB site
Description: Structure of mouse Valpha14Vbeta2-mouseCD1d-alpha-Galactosylceramide
Class: immune system
Keywords: mouse CD1d, mouse NKT, IMMUNE SYSTEM
Deposited on
2011-09-04, released
2011-12-14
The last revision prior to the SCOPe 2.07 freeze date was dated
2011-12-14, with a file datestamp of
2011-12-09.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.22
AEROSPACI score: 0.15
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Antigen-presenting glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1d1, Cd1.1
Database cross-references and differences (RAF-indexed):
- Uniprot P11609 (Start-278)
- see remark 999 (200)
- expression tag (279-298)
Domains in SCOPe 2.07: d3to4a1, d3to4a2, d3to4a3 - Chain 'B':
Compound: beta-2 microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2m, RP23-34E24.5-001, mCG_11606
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3to4b_ - Chain 'C':
Compound: NKT Valpha14 (MOUSE VARIABLE DOMAIN, HUMAN CONSTANT DOMAIN)
Species: Homo sapiens, Mus musculus [TaxId:9606, 10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3to4c1, d3to4c2 - Chain 'D':
Compound: NKT Vbeta2 (MOUSE VARIABLE DOMAIN, HUMAN CONSTANT DOMAIN)
Species: Homo sapiens, Mus musculus [TaxId:9606, 10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3to4d1, d3to4d2 - Heterogens: AGH, NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3to4A (A:)
seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
adetwylqatldveageeaglacrvkhsslggqdiilywgslhhildaqkmvwnhrhhhh
hh
Sequence, based on observed residues (ATOM records): (download)
>3to4A (A:)
ytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqweklq
hmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemyasesflhvafqgkyvvrfwg
tswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqekpv
awlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqat
ldveageeaglacrvkhsslggqdiilywgslhhildaqkmvwnhrhhh
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3to4B (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>3to4B (B:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3to4C (C:)
tqveqspqslvvrqgensvlqcnysvtpdnhlrwfkqdtgkglvsltvlvdqkdktsngr
ysatldkdakhstlhitatllddtatyicvvgdrgsalgrlhfgagtqlivipdiqnpdp
avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdktvldmrsmdfksnsavawsn
ksdfacanafnnsiipedtffpspendgggck
Sequence, based on observed residues (ATOM records): (download)
>3to4C (C:)
tqveqspqslvvrqgensvlqcnysvtpdnhlrwfkqdtgkglvsltvlvdqkdktsngr
ysatldkdakhstlhitatllddtatyicvvgdrgsalgrlhfgagtqlivipdiqnpdp
avyqlrdskssdksvclftdfdsqtvyitdktvldfksnsavawsnksdfacanafnnsi
ipedtffpsp
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3to4D (D:)
vtlleqnprwrlvprgqavnlrcilknsqypwmswyqqdlqkqlqwlftlrspgdkevks
lpgadylatrvtdtelrlqvanmsqgrtlyctssadhwtntgqlyfgegskltvledlkn
vfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplke
qpalndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaea
wgradqdrgggcd
Sequence, based on observed residues (ATOM records): (download)
>3to4D (D:)
lleqnprwrlvprgqavnlrcilknsqypwmswyqqdlqkqlqwlftlrspgdkevkslp
gadylatrvtdtelrlqvanmsqgrtlyctssadhwtntgqlyfgegskltvledlknvf
ppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplkeqp
alndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawg
rad