PDB entry 3tmp

View 3tmp on RCSB PDB site
Description: The catalytic domain of human deubiquitinase DUBA in complex with ubiquitin aldehyde
Class: Hydrolase/Protein Binding
Keywords: OTU fold, Deubiquitinase, phosphorylation, Hydrolase-Protein Binding complex
Deposited on 2011-08-31, released 2012-01-11
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-02-29, with a file datestamp of 2012-02-24.
Experiment type: XRAY
Resolution: 1.91 Å
R-factor: 0.192
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: OTU domain-containing protein 5
    Species: Homo sapiens [TaxId:9606]
    Gene: DUBA, OTUD5
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC, ubiquitin aldehyde
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3tmpb_
  • Chain 'C':
    Compound: OTU domain-containing protein 5
    Species: Homo sapiens [TaxId:9606]
    Gene: DUBA, OTUD5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q96G74 (4-End)
      • expression tag (2-3)
  • Chain 'D':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC, ubiquitin aldehyde
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3tmpd_
  • Chain 'E':
    Compound: OTU domain-containing protein 5
    Species: Homo sapiens [TaxId:9606]
    Gene: DUBA, OTUD5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q96G74 (4-End)
      • expression tag (0-3)
  • Chain 'F':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC, ubiquitin aldehyde
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3tmpf_
  • Chain 'G':
    Compound: OTU domain-containing protein 5
    Species: Homo sapiens [TaxId:9606]
    Gene: DUBA, OTUD5
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC, ubiquitin aldehyde
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3tmph_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3tmpB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3tmpD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3tmpF (F:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3tmpH (H:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg