PDB entry 3tmp

View 3tmp on RCSB PDB site
Description: The catalytic domain of human deubiquitinase DUBA in complex with ubiquitin aldehyde
Class: Hydrolase/Protein Binding
Keywords: OTU fold, Deubiquitinase, phosphorylation, Hydrolase-Protein Binding complex
Deposited on 2011-08-31, released 2012-01-11
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-02-29, with a file datestamp of 2012-02-24.
Experiment type: XRAY
Resolution: 1.91 Å
R-factor: 0.192
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: OTU domain-containing protein 5
  Species: Homo sapiens [TaxId:9606]
  Gene: DUBA, OTUD5
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q96G74
• Chain 'B':
  Compound: Polyubiquitin-C
  Species: Homo sapiens [TaxId:9606]
  Gene: UBC, ubiquitin aldehyde
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG48 (0-75)
  Domains in SCOPe 2.05: d3tmpb_
• Chain 'C':
  Compound: OTU domain-containing protein 5
  Species: Homo sapiens [TaxId:9606]
  Gene: DUBA, OTUD5
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q96G74 (4-End)
    • expression tag (2-3)
• Chain 'D':
  Compound: Polyubiquitin-C
  Species: Homo sapiens [TaxId:9606]
  Gene: UBC, ubiquitin aldehyde
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG48 (0-75)
  Domains in SCOPe 2.05: d3tmpd_
• Chain 'E':
  Compound: OTU domain-containing protein 5
  Species: Homo sapiens [TaxId:9606]
  Gene: DUBA, OTUD5
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q96G74 (4-End)
    • expression tag (0-3)
• Chain 'F':
  Compound: Polyubiquitin-C
  Species: Homo sapiens [TaxId:9606]
  Gene: UBC, ubiquitin aldehyde
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG48 (0-75)
  Domains in SCOPe 2.05: d3tmpf_
• Chain 'G':
  Compound: OTU domain-containing protein 5
  Species: Homo sapiens [TaxId:9606]
  Gene: DUBA, OTUD5
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q96G74
• Chain 'H':
  Compound: Polyubiquitin-C
  Species: Homo sapiens [TaxId:9606]
  Gene: UBC, ubiquitin aldehyde
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG48 (0-75)
  Domains in SCOPe 2.05: d3tmph_
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3tmpB (B:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrgg
  

  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3tmpD (D:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrgg
  

  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3tmpF (F:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrgg
  

  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3tmpH (H:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrgg