PDB entry 3t8x
View 3t8x on RCSB PDB site
Description: Crystal structure of human CD1b in complex with synthetic antigenic diacylsulfoglycolipid SGL12 and endogenous spacer
Class: immune system
Keywords: endogenous spacer ligand, mycobacterial diacylsulfoglycolipid, MHC, glycoprotein, immune system, Immunoglobulin domain/MHC I, Antigen presentation, glycolipid antigen binding, Glycosylation, Cell membrane
Deposited on
2011-08-02, released
2011-10-26
The last revision prior to the SCOPe 2.02 freeze date was dated
2011-10-26, with a file datestamp of
2011-10-21.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.167
AEROSPACI score: 0.51
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T-cell surface glycoprotein cd1b
Species: Homo sapiens [TaxId:9606]
Gene: CD1B
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: B2M, CDABP0092, HDCMA22P
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3t8xb_ - Chain 'C':
Compound: T-cell surface glycoprotein cd1b
Species: Homo sapiens [TaxId:9606]
Gene: CD1B
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: B2M, CDABP0092, HDCMA22P
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3t8xd_ - Heterogens: SO4, ACT, T8X, ULI, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3t8xB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3t8xD (D:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm