PDB entry 3t22
View 3t22 on RCSB PDB site
Description: Crystal structure of OxyR mutant from Porphyromonas gingivalis
Class: transcription regulator
Keywords: beta-alpha-barrels, DNA-binding, Transcription regulation, TRANSCRIPTION REGULATOR
Deposited on
2011-07-22, released
2013-04-17
The last revision prior to the SCOPe 2.08 freeze date was dated
2013-11-27, with a file datestamp of
2013-11-22.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.236
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Redox-sensitive transcriptional activator OxyR
Species: Porphyromonas gingivalis [TaxId:837]
Gene: oxyR
Database cross-references and differences (RAF-indexed):
- Uniprot Q20K61 (Start-218)
- engineered mutation (109)
Domains in SCOPe 2.08: d3t22a_ - Chain 'B':
Compound: Redox-sensitive transcriptional activator OxyR
Species: Porphyromonas gingivalis [TaxId:837]
Gene: oxyR
Database cross-references and differences (RAF-indexed):
- Uniprot Q20K61
- engineered mutation (109)
Domains in SCOPe 2.08: d3t22b_ - Chain 'C':
Compound: Redox-sensitive transcriptional activator OxyR
Species: Porphyromonas gingivalis [TaxId:837]
Gene: oxyR
Database cross-references and differences (RAF-indexed):
- Uniprot Q20K61 (Start-218)
- engineered mutation (109)
Domains in SCOPe 2.08: d3t22c_ - Chain 'D':
Compound: Redox-sensitive transcriptional activator OxyR
Species: Porphyromonas gingivalis [TaxId:837]
Gene: oxyR
Database cross-references and differences (RAF-indexed):
- Uniprot Q20K61
- engineered mutation (109)
Domains in SCOPe 2.08: d3t22d_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3t22A (A:)
tgrlniavlptiapyllprvfpiwkkelagleihvsemqtsrclasllsgeidmaiiask
aetegleddllyyeeflgyvsrceplfeqdvirttevnphrlwlldeghsfrdqlvrfcq
mkglherqtaysggsmeafmrlvesgqgitfipqltveqlspsqkelvrpfgmprpvrev
rlavrqdysrrklreqligllrsavpsdmhklqtgqhlahhhh
Sequence, based on observed residues (ATOM records): (download)
>3t22A (A:)
grlniavlptiapyllprvfpiwkkelagleihvsemqtsrclasllsgeidmaiiaska
etegleddllyyeeflgyvsrceplfeqdvirttevnphrlwlldeghsfrdqlvrfcqm
aysggsmeafmrlvesgqgitfipqltveqlspsqkelvrpfgmprpvrevrlavrqdys
rrklreqligllrsavpsdmhklqtgqhla
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3t22B (B:)
tgrlniavlptiapyllprvfpiwkkelagleihvsemqtsrclasllsgeidmaiiask
aetegleddllyyeeflgyvsrceplfeqdvirttevnphrlwlldeghsfrdqlvrfcq
mkglherqtaysggsmeafmrlvesgqgitfipqltveqlspsqkelvrpfgmprpvrev
rlavrqdysrrklreqligllrsavpsdmhklqtgqhlahhhh
Sequence, based on observed residues (ATOM records): (download)
>3t22B (B:)
grlniavlptiapyllprvfpiwkkelagleihvsemqtsrclasllsgeidmaiiaska
etegleddllyyeeflgyvsrceplfeqdvirttevnphrlwlldeghsfrdqlvrfcay
sggsmeafmrlvesgqgitfipqltveqlspsqkelvrpfgmprpvrevrlavrqdysrr
klreqligllrsavpsdmhklqtgqhl
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3t22C (C:)
tgrlniavlptiapyllprvfpiwkkelagleihvsemqtsrclasllsgeidmaiiask
aetegleddllyyeeflgyvsrceplfeqdvirttevnphrlwlldeghsfrdqlvrfcq
mkglherqtaysggsmeafmrlvesgqgitfipqltveqlspsqkelvrpfgmprpvrev
rlavrqdysrrklreqligllrsavpsdmhklqtgqhlahhhh
Sequence, based on observed residues (ATOM records): (download)
>3t22C (C:)
grlniavlptiapyllprvfpiwkkelagleihvsemqtsrclasllsgeidmaiiaska
etegleddllyyeeflgyvsrceplfeqdvirttevnphrlwlldeghsfrdqlvrfcqm
kgltaysggsmeafmrlvesgqgitfipqltveqlspsqkelvrpfgmprpvrevrlavr
qdysrrklreqligllrsavpsdmhklqtgqhla
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3t22D (D:)
tgrlniavlptiapyllprvfpiwkkelagleihvsemqtsrclasllsgeidmaiiask
aetegleddllyyeeflgyvsrceplfeqdvirttevnphrlwlldeghsfrdqlvrfcq
mkglherqtaysggsmeafmrlvesgqgitfipqltveqlspsqkelvrpfgmprpvrev
rlavrqdysrrklreqligllrsavpsdmhklqtgqhlahhhh
Sequence, based on observed residues (ATOM records): (download)
>3t22D (D:)
lniavlptiapyllprvfpiwkkelagleihvsemqtsrclasllsgeidmaiiaskaet
egleddllyyeeflgyvsrceplfeqdvirttevnphrlwlldeghsfrdqlvrfcqmta
ysggsmeafmrlvesgqgitfipqltveqlspsqkelvrpfgmprpvrevrlavrqdysr
rklreqligllrsavpsdmhklqtgqhl