PDB entry 3t1f

View 3t1f on RCSB PDB site
Description: Crystal structure of the mouse CD1d-Glc-DAG-s2 complex
Class: immune system
Keywords: antigen presentation, glycolipid, NKT cells, IMMUNE SYSTEM
Deposited on 2011-07-21, released 2011-09-21
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-10-05, with a file datestamp of 2011-09-30.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.188
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antigen-presenting glycoprotein CD1d1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1.1, Cd1d1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11609 (Start-278)
      • variant (200)
    Domains in SCOPe 2.03: d3t1fa1, d3t1fa2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M, beta-2-microglobulin
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (0-98)
      • variant (84)
    Domains in SCOPe 2.03: d3t1fb_
  • Heterogens: NAG, 3TF, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3t1fA (A:)
seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
adetwylqatldveageeaglacrvkhsslggqdiilywhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3t1fA (A:)
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmdypieiqlsagcemasesflhvafqgkyvvrfwgtswq
tvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqekpvawls
svpshghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqatldveag
eeaglacrvkhsslggqdiilyw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3t1fB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm