PDB entry 3szi

View 3szi on RCSB PDB site
Description: Structure of apo shwanavidin (P21 form)
Class: Biotin-binding protein
Keywords: High affinity systems, avidin, streptavidin, biotin, rhizavidin, shwanavidin, Biotin-binding protein
Deposited on 2011-07-19, released 2012-04-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-06-13, with a file datestamp of 2012-06-08.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: 0.159
AEROSPACI score: 0.7 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3szia_
  • Chain 'B':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3szib_
  • Chain 'C':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3szic_
  • Chain 'D':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12QS6 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d3szid1, d3szid2
  • Chain 'E':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3szie_
  • Chain 'F':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3szif_
  • Chain 'G':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12QS6 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d3szig1, d3szig2
  • Chain 'H':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3szih_
  • Chain 'I':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3szii_
  • Chain 'J':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12QS6 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d3szij1, d3szij2
  • Chain 'K':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3szik_
  • Chain 'L':
    Compound: Avidin/streptavidin
    Species: Shewanella denitrificans [TaxId:318161]
    Gene: Sden_0912
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3szil_
  • Heterogens: FMT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3sziA (A:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziA (A:)
eltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgtaisfst
kwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqtsa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3sziB (B:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziB (B:)
ltamsawvnqdgstlyinsinaqgeltgsyinraafacqnspypvngwvfgtaisfstkw
lnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3sziC (C:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziC (C:)
aqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgtaisf
stkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3sziD (D:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziD (D:)
amaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgtai
sfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqts

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3sziE (E:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziE (E:)
aqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgtaisf
stkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqts

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3sziF (F:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziF (F:)
qeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgtaisfs
tkwlnsvescnsitswsgfyintgqgkistlwqlvvngssspsqilkgqdvfsqtsa

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3sziG (G:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziG (G:)
amaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgtai
sfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3sziH (H:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziH (H:)
aqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgtaisf
stkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3sziI (I:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziI (I:)
aqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgtaisf
stkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >3sziJ (J:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziJ (J:)
amaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgtai
sfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >3sziK (K:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziK (K:)
maqeltamsawvnqdgstlyinsinaqgeltgsyinraafacqnspypvngwvfgtaisf
stkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >3sziL (L:)
mamaqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgta
isfstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqt
sa

    Sequence, based on observed residues (ATOM records): (download) 
    >3sziL (L:)
maqeltamsawvnqdgstlyinsinaqgeltgsyinraagfacqnspypvngwvfgtais
fstkwlnsvescnsitswsgfyintggqgkistlwqlvvngssspsqilkgqdvfsqtsa