PDB entry 3scm

View 3scm on RCSB PDB site
Description: Crystal structure of autoreactive-Valpha14-Vbeta6 NKT TCR in complex with CD1d-isoglobotrihexosylceramide
Class: immune system
Keywords: Ternary Complex, Immunity, APC Cell surface, IMMUNE SYSTEM
Deposited on 2011-06-08, released 2011-10-05
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-10-05, with a file datestamp of 2011-09-30.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.275
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Antigen-presenting glycoprotein CD1d1
  Species: Mus musculus [TaxId:10090]
  Gene: Cd1d1, Cd1.1
  Database cross-references and differences (RAF-indexed):
  • Uniprot P11609 (Start-278)
    • see remark 999 (200)
    • expression tag (279-294)
• Chain 'B':
  Compound: Beta-2-microglobulin
  Species: Mus musculus [TaxId:10090]
  Gene: B2M
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01887 (0-98)
    • see remark 999 (84)
  Domains in SCOPe 2.01: d3scmb_
• Chain 'C':
  Compound: NKT TCR Valpha14 chain
  Species: Mus musculus , Homo sapiens [TaxId:10090, 9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 3SCM (0-End)
• Chain 'D':
  Compound: NKT TCR autoreactive-Vbeta6 chain
  Species: Mus musculus , Homo sapiens [TaxId:10090, 9606]
  Database cross-references and differences (RAF-indexed):
  • PDB 3SCM
• Heterogens: NAG, LGN, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3scmB (B:)
  iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
  sfyilahteftptetdtyacrvkhasmaepktvywdrdm
  

  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.