PDB entry 3s12
View 3s12 on RCSB PDB site
Description: Crystal structure of H5N1 influenza virus hemagglutinin, strain YU562 crystal form 1
Class: viral protein
Keywords: hemagglutinin, viral protein, viral envelope protein, viral fusion protein
Deposited on
2011-05-14, released
2011-12-14
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hemagglutinin HA1 chain
Species: Influenza A virus [TaxId:196426]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3s12a1, d3s12a2 - Chain 'B':
Compound: Hemagglutinin HA2 chain
Species: Influenza A virus [TaxId:196426]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3s12b_ - Heterogens: SO4, NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3s12A (A:)
dlgsmadpgylledqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgv
kplilrdcsvagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsr
inhfekiqiipksswsnheassgvssacpylgkssffrnvvwlikknsayptikrsynnt
nqedllvlwgihhpndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrme
ffwtilkpndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgains
smpfhnihpltigecpkyvksnrlvlatglrntpqr
Sequence, based on observed residues (ATOM records): (download)
>3s12A (A:)
edqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdnvpewsyivekaspandlcypgdfndyeelkhllsrinhfekiqiipkssw
snheassgvssacpylgkssffrnvvwlikknsayptikrsynntnqedllvlwgihhpn
daaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndainfe
sngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihpltigec
pkyvksnrlvlatglrnt
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3s12B (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvkngtydypqyseearlnreeisgvrslv
pr
Sequence, based on observed residues (ATOM records): (download)
>3s12B (B:)
ieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmntqfeavgre
fnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlydkvrlqlrdn
akelgngcfefyhkcdnecmesvkngtydypqyseear