PDB entry 3rzc

View 3rzc on RCSB PDB site
Description: Structure of the self-antigen iGb3 bound to mouse CD1d and in complex with the iNKT TCR
Class: immune system
Keywords: antigen presentation, glycolipid, NKT cells, IMMUNE SYSTEM
Deposited on 2011-05-11, released 2011-08-24
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-09-07, with a file datestamp of 2011-09-02.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.237
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antigen-presenting glycoprotein CD1d1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1.1, CD1d, Cd1d1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M, beta-2-microglobulin
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (Start-98)
      • variant (84)
    Domains in SCOPe 2.01: d3rzcb_
  • Chain 'C':
    Compound: Valpha14
    Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
    Gene: Valpha14
    Database cross-references and differences (RAF-indexed):
    • PDB 3RZC
  • Chain 'D':
    Compound: Vbeta8.2
    Species: MUS MUSCULUS, HOMO SAPIENS [TaxId:10090, 9606]
    Gene: Vbeta8.2
    Database cross-references and differences (RAF-indexed):
    • PDB 3RZC (Start-240)
  • Heterogens: LGN, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3rzcB (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >3rzcB (B:)
    qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
    fyilahteftptetdtyacrvkhasmaepktvywdrdm
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.