PDB entry 3rul

View 3rul on RCSB PDB site
Description: New strategy to analyze structures of glycopeptide-target complexes
Class: Signaling Protein/Antibiotic
Keywords: antibiotic, glycopeptide, native protein ligation, fusion, carboxymethylation of cysteine, dalbavancin, Signaling Protein-Antibiotic complex
Deposited on 2011-05-05, released 2012-06-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-06-06, with a file datestamp of 2012-06-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.244
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (0-74)
      • see remark 999 (75-78)
    Domains in SCOPe 2.06: d3rula_
  • Chain 'B':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (0-74)
      • see remark 999 (75-78)
    Domains in SCOPe 2.06: d3rulb_
  • Chain 'C':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (0-74)
      • see remark 999 (75-78)
    Domains in SCOPe 2.06: d3rulc_
  • Chain 'D':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (0-74)
      • see remark 999 (75-78)
    Domains in SCOPe 2.06: d3ruld_
  • Chain 'E':
    Compound: Dalbavancin
    Database cross-references and differences (RAF-indexed):
    • PDB 3RUL (0-6)
  • Chain 'F':
    Compound: Dalbavancin
    Database cross-references and differences (RAF-indexed):
    • PDB 3RUL (0-6)
  • Chain 'G':
    Compound: Dalbavancin
    Database cross-references and differences (RAF-indexed):
    • PDB 3RUL (0-6)
  • Chain 'H':
    Compound: Dalbavancin
    Database cross-references and differences (RAF-indexed):
    • PDB 3RUL (0-6)
  • Heterogens: TLA, CL, N1L, MAN, M12, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3rulA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgckaa
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3rulB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgckaa
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3rulC (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgckaa
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3rulD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgckaa
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.