PDB entry 3rkt
View 3rkt on RCSB PDB site
Description: Crystal Structure of the Manihot esculenta Hydroxynitrile Lyase (MeHNL) 3KP triple mutant
Class: lyase
Keywords: reversible, stereospecific metabolism, cyanohydrins, acetate cyanohydrin, LYASE
Deposited on
2011-04-18, released
2012-06-20
Made obsolete by
3x3h on
2016-03-02
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-06-20, with a file datestamp of 2012-06-15.
Experiment type: XRAY
Resolution: 2.91 Å
R-factor: 0.215
AEROSPACI score: 0.25 (click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hydroxynitrilase
Species: Manihot esculenta [TaxId:3983]
Gene: HNL
Database cross-references and differences (RAF-indexed):
- Uniprot P52705 (0-257)
- engineered mutation (175)
- engineered mutation (198)
- engineered mutation (223)
Domains in SCOPe 2.06: d3rkta_ - Chain 'B':
Compound: Hydroxynitrilase
Species: Manihot esculenta [TaxId:3983]
Gene: HNL
Database cross-references and differences (RAF-indexed):
- Uniprot P52705 (0-257)
- engineered mutation (175)
- engineered mutation (198)
- engineered mutation (223)
Domains in SCOPe 2.06: d3rktb_ - Chain 'C':
Compound: Hydroxynitrilase
Species: Manihot esculenta [TaxId:3983]
Gene: HNL
Database cross-references and differences (RAF-indexed):
- Uniprot P52705 (0-257)
- engineered mutation (175)
- engineered mutation (198)
- engineered mutation (223)
Domains in SCOPe 2.06: d3rktc_ - Chain 'D':
Compound: Hydroxynitrilase
Species: Manihot esculenta [TaxId:3983]
Gene: HNL
Database cross-references and differences (RAF-indexed):
- Uniprot P52705 (0-257)
- engineered mutation (175)
- engineered mutation (198)
- engineered mutation (223)
Domains in SCOPe 2.06: d3rktd_ - Chain 'E':
Compound: Hydroxynitrilase
Species: Manihot esculenta [TaxId:3983]
Gene: HNL
Database cross-references and differences (RAF-indexed):
- Uniprot P52705 (0-257)
- engineered mutation (175)
- engineered mutation (198)
- engineered mutation (223)
Domains in SCOPe 2.06: d3rkte_ - Chain 'F':
Compound: Hydroxynitrilase
Species: Manihot esculenta [TaxId:3983]
Gene: HNL
Database cross-references and differences (RAF-indexed):
- Uniprot P52705 (0-257)
- engineered mutation (175)
- engineered mutation (198)
- engineered mutation (223)
Domains in SCOPe 2.06: d3rktf_ - Chain 'G':
Compound: Hydroxynitrilase
Species: Manihot esculenta [TaxId:3983]
Gene: HNL
Database cross-references and differences (RAF-indexed):
- Uniprot P52705 (0-257)
- engineered mutation (175)
- engineered mutation (198)
- engineered mutation (223)
Domains in SCOPe 2.06: d3rktg_ - Chain 'H':
Compound: Hydroxynitrilase
Species: Manihot esculenta [TaxId:3983]
Gene: HNL
Database cross-references and differences (RAF-indexed):
- Uniprot P52705 (0-257)
- engineered mutation (175)
- engineered mutation (198)
- engineered mutation (223)
Domains in SCOPe 2.06: d3rkth_
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3rktA (A:)
mvtahfvlihtichgawiwhklkpaleraghkvtaldmaasgidprqieqinsfdeysep
lltfleklpqgekviivgescaglniaiaadryvdkiaagvfhnsllpdtvhspsytvek
llesfpdwrdteyftftnitgetittmklgfvllrenlftkctdgeyelakmvmrpgslf
qnvlaqrpkftekgygsipkvyiwtdqdkiflpdfqrwqianyppdkvyqvqggdhklql
tkteevahilqevadaya
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3rktB (B:)
mvtahfvlihtichgawiwhklkpaleraghkvtaldmaasgidprqieqinsfdeysep
lltfleklpqgekviivgescaglniaiaadryvdkiaagvfhnsllpdtvhspsytvek
llesfpdwrdteyftftnitgetittmklgfvllrenlftkctdgeyelakmvmrpgslf
qnvlaqrpkftekgygsipkvyiwtdqdkiflpdfqrwqianyppdkvyqvqggdhklql
tkteevahilqevadaya
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3rktC (C:)
mvtahfvlihtichgawiwhklkpaleraghkvtaldmaasgidprqieqinsfdeysep
lltfleklpqgekviivgescaglniaiaadryvdkiaagvfhnsllpdtvhspsytvek
llesfpdwrdteyftftnitgetittmklgfvllrenlftkctdgeyelakmvmrpgslf
qnvlaqrpkftekgygsipkvyiwtdqdkiflpdfqrwqianyppdkvyqvqggdhklql
tkteevahilqevadaya
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3rktD (D:)
mvtahfvlihtichgawiwhklkpaleraghkvtaldmaasgidprqieqinsfdeysep
lltfleklpqgekviivgescaglniaiaadryvdkiaagvfhnsllpdtvhspsytvek
llesfpdwrdteyftftnitgetittmklgfvllrenlftkctdgeyelakmvmrpgslf
qnvlaqrpkftekgygsipkvyiwtdqdkiflpdfqrwqianyppdkvyqvqggdhklql
tkteevahilqevadaya
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>3rktE (E:)
mvtahfvlihtichgawiwhklkpaleraghkvtaldmaasgidprqieqinsfdeysep
lltfleklpqgekviivgescaglniaiaadryvdkiaagvfhnsllpdtvhspsytvek
llesfpdwrdteyftftnitgetittmklgfvllrenlftkctdgeyelakmvmrpgslf
qnvlaqrpkftekgygsipkvyiwtdqdkiflpdfqrwqianyppdkvyqvqggdhklql
tkteevahilqevadaya
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>3rktF (F:)
mvtahfvlihtichgawiwhklkpaleraghkvtaldmaasgidprqieqinsfdeysep
lltfleklpqgekviivgescaglniaiaadryvdkiaagvfhnsllpdtvhspsytvek
llesfpdwrdteyftftnitgetittmklgfvllrenlftkctdgeyelakmvmrpgslf
qnvlaqrpkftekgygsipkvyiwtdqdkiflpdfqrwqianyppdkvyqvqggdhklql
tkteevahilqevadaya
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>3rktG (G:)
mvtahfvlihtichgawiwhklkpaleraghkvtaldmaasgidprqieqinsfdeysep
lltfleklpqgekviivgescaglniaiaadryvdkiaagvfhnsllpdtvhspsytvek
llesfpdwrdteyftftnitgetittmklgfvllrenlftkctdgeyelakmvmrpgslf
qnvlaqrpkftekgygsipkvyiwtdqdkiflpdfqrwqianyppdkvyqvqggdhklql
tkteevahilqevadaya
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>3rktH (H:)
mvtahfvlihtichgawiwhklkpaleraghkvtaldmaasgidprqieqinsfdeysep
lltfleklpqgekviivgescaglniaiaadryvdkiaagvfhnsllpdtvhspsytvek
llesfpdwrdteyftftnitgetittmklgfvllrenlftkctdgeyelakmvmrpgslf
qnvlaqrpkftekgygsipkvyiwtdqdkiflpdfqrwqianyppdkvyqvqggdhklql
tkteevahilqevadaya