PDB entry 3rkd
View 3rkd on RCSB PDB site
Description: Hepatitis E Virus E2s domain (Genotype I) in complex with a neutralizing antibody
Class: viral protein/immune system
Keywords: Hepatitis E virus capsid protein, neutralizing antibody, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on
2011-04-18, released
2011-06-08
The last revision prior to the SCOPe 2.05 freeze date was dated
2013-07-03, with a file datestamp of
2013-06-28.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.189
AEROSPACI score: 0.48
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: capsid protein
Species: Hepatitis E virus [TaxId:12461]
Gene: ORF2
Database cross-references and differences (RAF-indexed):
- Uniprot B0VX51 (0-144)
- engineered mutation (73)
- expression tag (145)
- Chain 'B':
Compound: capsid protein
Species: Hepatitis E virus [TaxId:12461]
Gene: ORF2
Database cross-references and differences (RAF-indexed):
- Uniprot B0VX51 (Start-144)
- engineered mutation (73)
- expression tag (145)
- Chain 'C':
Compound: monoclonal antibody, light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3rkdc1, d3rkdc2 - Chain 'D':
Compound: monoclonal antibody, heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: monoclonal antibody, heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: monoclonal antibody, light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3rkdl1, d3rkdl2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3rkdC (C:)
diqmtqspaslsvsvgetvtitcraseiiysnlawyqqkqgkspqllvysatnlaegvps
rfsgsgsgtqyslkinslqsedfgsyycqhfwgnpwtfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec
Sequence, based on observed residues (ATOM records): (download)
>3rkdC (C:)
diqmtqspaslsvsvgetvtitcraseiiysnlawyqqkqgkspqllvysatnlaegvps
rfsgsgsgtqyslkinslqsedfgsyycqhfwgnpwtfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrne
- Chain 'D':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3rkdL (L:)
diqmtqspaslsvsvgetvtitcraseiiysnlawyqqkqgkspqllvysatnlaegvps
rfsgsgsgtqyslkinslqsedfgsyycqhfwgnpwtfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrnec
Sequence, based on observed residues (ATOM records): (download)
>3rkdL (L:)
diqmtqspaslsvsvgetvtitcraseiiysnlawyqqkqgkspqllvysatnlaegvps
rfsgsgsgtqyslkinslqsedfgsyycqhfwgnpwtfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrne