PDB entry 3rfc
View 3rfc on RCSB PDB site
Description: Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP
Class: ligase
Keywords: ADP forming ligase, dimerization of two D-alanines, LIGASE
Deposited on
2011-04-06, released
2011-05-04
The last revision prior to the SCOPe 2.04 freeze date was dated
2011-05-04, with a file datestamp of
2011-05-06.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.208
AEROSPACI score: 0.39
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: D-alanine--D-alanine ligase 1
Species: Xanthomonas oryzae pv. oryzae [TaxId:342109]
Database cross-references and differences (RAF-indexed):
- Uniprot Q2P8P8
- engineered mutation (343)
Domains in SCOPe 2.04: d3rfca1, d3rfca2 - Heterogens: ADP, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3rfcA (A:)
hhhhhhhssenlyfqghmrkirvglifggksaehevslqsarnildaldpqrfepvligi
dkqgqwhvndpdsfllhaddparialhrsgrgvallpgaqqqqlrpiqpeqalaqidvvf
pivhgtlgedgslqgllrmanlpfvgsgvlgsavamdkdmakrvlrdarlavapfvcfdr
htaahadvdtliaqlglplfvkpanqgssvgvsqvrtadafaaalalalaydhkvlveaa
vagreiecavlgnavphasvcgevvvhdafysyatkyisehgaeivipadidaqtqqriq
qiavqayqalgcagmarvdvflcadgrivinevntlpgftrisvypklwqasgldyrgli
trlielalerhtddqllrsavelh
Sequence, based on observed residues (ATOM records): (download)
>3rfcA (A:)
rkirvglifggksaehevslqsarnildaldpqrfepvligidkqgqwhvndpdsfllha
ddparialhrsgrgvallpgaqqqqlrpiqqalaqidvvfpivhgtlgedgslqgllrma
nlpfvgsgvlgsavamdkdmakrvlrdarlavapfvcfdrhtaahadvdtliaqlglplf
vkpanqgssvgvsqvrtadafaaalalalaydhkvlveaavagreiecavlgnavphasv
cgevvveivipadidaqtqqriqqiavqayqalgcagmarvdvflcadgrivinevntlp
gftrisvypklwqasgldyrglitrlielalerhtddqllrsav