PDB entry 3raj
View 3raj on RCSB PDB site
Description: Crystal structure of human CD38 in complex with the Fab fragment of antibody HB7
Class: hydrolase/immune system
Keywords: CD38, ADP-ribosyl cyclase, cyclic ADP-ribose, X-crystallography, Calcium signaling, agonistic antibody, HB7, HYDROLASE-IMMUNE SYSTEM complex
Deposited on
2011-03-28, released
2011-04-27
The last revision prior to the SCOPe 2.04 freeze date was dated
2011-04-27, with a file datestamp of
2011-04-22.
Experiment type: XRAY
Resolution: 3.04 Å
R-factor: 0.208
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ADP-ribosyl cyclase 1
Species: Homo sapiens [TaxId:9606]
Gene: CD38
Database cross-references and differences (RAF-indexed):
- Uniprot P28907
- engineered mutation (56)
- engineered mutation (120)
- engineered mutation (165)
- engineered mutation (175)
Domains in SCOPe 2.04: d3raja_ - Chain 'H':
Compound: heavy chain of the Fab fragment of antibody HB7
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: light chain of the Fab fragment of antibody HB7
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3rajl1, d3rajl2
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3rajA (A:)
efwrqtwsgpgttkrfpetvlarcvkyteihpemrhvdcqsvwdafkgafiskhpcdite
edyqplmklgtqtvpcnkillwsrikdlahqftqvqrdmftledtllgyladdltwcgef
dtskinyqscpdwrkdcsnnpvsvfwktvsrrfaeaacdvvhvmldgsrskifdkdstfg
svevhnlqpekvqtleawvihggredsrdlcqdptikelesiiskrniqfsckniyrpdk
flqcvknpedssctsei
Sequence, based on observed residues (ATOM records): (download)
>3rajA (A:)
wsgpgttkrfpetvlarcvkyteihpemrhvdcqsvwdafkgafiskhpcditeedyqpl
mklgtqtvpcnkillwsrikdlahqftqvqrdmftledtllgyladdltwcgefdtskin
yqscpdwrkdcsnnpvsvfwktvsrrfaeaacdvvhvmldgsrskifdkdstfgsvevhn
lqpekvqtleawvihggredsrdlcqdptikelesiiskrniqfsckniy
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3rajL (L:)
iqmtqssssfsvslgdrvtitckasediynrlawyqqkpgnaprllisgatsletgvpsr
fsgsgsgkdytlsitslqtedvatyycqqywstptfgggtkleikradaaptvsifppss
eqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltlt
kdeyerhnsytceathktstspivksfnrne
Sequence, based on observed residues (ATOM records): (download)
>3rajL (L:)
iqmtqssssfsvslgdrvtitckasediynrlawyqqkpgnaprllisgatsletgvpsr
fsgsgsgkdytlsitslqtedvatyycqqywstptfgggtkleikradaaptvsifppss
eqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltlt
kdeyerhnsytceathktstspivksfn