PDB entry 3r5v

View 3r5v on RCSB PDB site
Description: The structure of calcium bound Thermococcus thioreducens inorganic pyrophosphatase at 298K
Class: hydrolase
Keywords: Inorganic Pyrophosphatase, Hydrolase
Deposited on 2011-03-19, released 2012-03-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tt-IPPase
    Species: Thermococcus thioreducens [TaxId:277988]
    Gene: Tt-IPPase
    Database cross-references and differences (RAF-indexed):
    • PDB 3R5V (0-End)
    Domains in SCOPe 2.08: d3r5va_
  • Chain 'B':
    Compound: Tt-IPPase
    Species: Thermococcus thioreducens [TaxId:277988]
    Gene: Tt-IPPase
    Database cross-references and differences (RAF-indexed):
    • PDB 3R5V (0-End)
    Domains in SCOPe 2.08: d3r5vb_
  • Chain 'C':
    Compound: Tt-IPPase
    Species: Thermococcus thioreducens [TaxId:277988]
    Gene: Tt-IPPase
    Database cross-references and differences (RAF-indexed):
    • PDB 3R5V (0-End)
    Domains in SCOPe 2.08: d3r5vc_
  • Chain 'D':
    Compound: Tt-IPPase
    Species: Thermococcus thioreducens [TaxId:277988]
    Gene: Tt-IPPase
    Database cross-references and differences (RAF-indexed):
    • PDB 3R5V (0-End)
    Domains in SCOPe 2.08: d3r5vd_
  • Chain 'E':
    Compound: Tt-IPPase
    Species: Thermococcus thioreducens [TaxId:277988]
    Gene: Tt-IPPase
    Database cross-references and differences (RAF-indexed):
    • PDB 3R5V (0-End)
    Domains in SCOPe 2.08: d3r5ve_
  • Chain 'F':
    Compound: Tt-IPPase
    Species: Thermococcus thioreducens [TaxId:277988]
    Gene: Tt-IPPase
    Database cross-references and differences (RAF-indexed):
    • PDB 3R5V (0-End)
    Domains in SCOPe 2.08: d3r5vf_
  • Heterogens: CA, MRD, MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3r5vA (A:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3r5vA (A:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3r5vB (B:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3r5vB (B:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3r5vC (C:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3r5vC (C:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3r5vD (D:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3r5vD (D:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3r5vE (E:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3r5vE (E:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3r5vF (F:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekfgkee

    Sequence, based on observed residues (ATOM records): (download) 
    >3r5vF (F:)
mnpfhelepgpevpevvyalieipkgsrnkyeldkktgllkldrvlyspffypvdygiip
qtwyddgdpfdimvimrepvypltiiearpigimkmedsgdkdwkvlavpvedpyfndwk
disdvpkafldeiahffqrykelqgkttkiegwgnaeeakreilraiemykekf