PDB entry 3qxu
View 3qxu on RCSB PDB site
Description: Free Structure of an Anti-Methotrexate CDR1-3 Graft VHH Antibody
Class: immune system
Keywords: Camelid Single Domain Antibody, Heavy Chain Only, VHH, Antibody, Anti-Hapten Antibody, CDR, Hapten Binding, Small Molecule Sensing, Ligand Binding, Low Molecular Weight Compound, Methotrexate, CDR1, CDR4, IMMUNE SYSTEM
Deposited on
2011-03-02, released
2011-07-06
The last revision prior to the SCOPe 2.06 freeze date was dated
2013-09-11, with a file datestamp of
2013-09-06.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.183
AEROSPACI score: 0.5
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Anti-Methotrexate CDR1-3 Graft
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3qxua_ - Chain 'B':
Compound: Anti-Methotrexate CDR1-3 Graft
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3qxub_ - Chain 'C':
Compound: Anti-Methotrexate CDR1-3 Graft
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3qxuc_ - Chain 'D':
Compound: Anti-Methotrexate CDR1-3 Graft
Species: LAMA GLAMA [TaxId:9844]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3qxud_ - Heterogens: FMT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3qxuA (A:)
gsqvqlvesggglvqaggslrlscaasrrssrswamawfrqapgkerefvakisgdgrlt
tygdsvkgrftisrdkgkntvylqmdslkpedtavyycaaddnyvtaswrsgpdywgqgt
qvtvss
Sequence, based on observed residues (ATOM records): (download)
>3qxuA (A:)
qvqlvesggglvqaggslrlscaasrrssrswamawfrqapgkerefvakisgdgrltty
gdsvkgrftisrdkgkntvylqmdslkpedtavyycaaddnyvtaswrsgpdywgqgtqv
tvss
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3qxuB (B:)
gsqvqlvesggglvqaggslrlscaasrrssrswamawfrqapgkerefvakisgdgrlt
tygdsvkgrftisrdkgkntvylqmdslkpedtavyycaaddnyvtaswrsgpdywgqgt
qvtvss
Sequence, based on observed residues (ATOM records): (download)
>3qxuB (B:)
qvqlvesggglvqaggslrlscaasrrsswamawfrqapgkerefvakisgdgrlttygd
svkgrftisrdkgkntvylqmdslkpedtavyycaaddnyvtaswrsgpdywgqgtqvtv
ss
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3qxuC (C:)
gsqvqlvesggglvqaggslrlscaasrrssrswamawfrqapgkerefvakisgdgrlt
tygdsvkgrftisrdkgkntvylqmdslkpedtavyycaaddnyvtaswrsgpdywgqgt
qvtvss
Sequence, based on observed residues (ATOM records): (download)
>3qxuC (C:)
qvqlvesggglvqaggslrlscaasrrssrswamawfrqapgkerefvakisgdgrltty
gdsvkgrftisrdkgkntvylqmdslkpedtavyycaaddnyvtaswrsgpdywgqgtqv
tvss
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3qxuD (D:)
gsqvqlvesggglvqaggslrlscaasrrssrswamawfrqapgkerefvakisgdgrlt
tygdsvkgrftisrdkgkntvylqmdslkpedtavyycaaddnyvtaswrsgpdywgqgt
qvtvss
Sequence, based on observed residues (ATOM records): (download)
>3qxuD (D:)
qvqlvesggglvqaggslrlscaasrrssrswamawfrqapgkerefvakisgdgrltty
gdsvkgrftisrdkgkntvylqmdslkpedtavyycaaddnyvtaswrsgpdywgqgtqv
tvss