PDB entry 3pqd

View 3pqd on RCSB PDB site
Description: Crystal structure of L-lactate dehydrogenase from Bacillus subtilis complexed with FBP and NAD+
Class: oxidoreductase
Keywords: Lactate dehydrogenase, FBP, NAD+, OXIDOREDUCTASE
Deposited on 2010-11-26, released 2012-01-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.38 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: l-lactate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: ldh, lctE, BSU03050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pqda1, d3pqda2
  • Chain 'B':
    Compound: l-lactate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: ldh, lctE, BSU03050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pqdb1, d3pqdb2
  • Chain 'C':
    Compound: l-lactate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: ldh, lctE, BSU03050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pqdc1, d3pqdc2
  • Chain 'D':
    Compound: l-lactate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: ldh, lctE, BSU03050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pqdd1, d3pqdd2
  • Chain 'E':
    Compound: l-lactate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: ldh, lctE, BSU03050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pqde1, d3pqde2
  • Chain 'F':
    Compound: l-lactate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: ldh, lctE, BSU03050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pqdf1, d3pqdf2
  • Chain 'G':
    Compound: l-lactate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: ldh, lctE, BSU03050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pqdg1, d3pqdg2
  • Chain 'H':
    Compound: l-lactate dehydrogenase
    Species: Bacillus subtilis [TaxId:1423]
    Gene: ldh, lctE, BSU03050
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pqdh1, d3pqdh2
  • Heterogens: FBP, NAD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3pqdA (A:)
mnkhvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqp
vktsygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflv
atnpvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgd
telpvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamsl
aritkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqfl
hsagvlknilkphfaeqkvnhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pqdA (A:)
khvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqpvk
tsygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflvat
npvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgdte
lpvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamslar
itkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqflhs
agvlknilkp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3pqdB (B:)
mnkhvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqp
vktsygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflv
atnpvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgd
telpvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamsl
aritkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqfl
hsagvlknilkphfaeqkvnhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pqdB (B:)
hvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqpvkt
sygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflvatn
pvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgdtel
pvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamslari
tkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqflhsa
gvlknilkphfa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3pqdC (C:)
mnkhvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqp
vktsygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflv
atnpvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgd
telpvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamsl
aritkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqfl
hsagvlknilkphfaeqkvnhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pqdC (C:)
hvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqpvkt
sygtyedckdadivcicagrlelveknlkifkgivsevmasgfdgiflvatnpvdiltya
twkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgdtelpvwshanv
ggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamslaritkailhne
nsiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqflhsagvlknilk
p

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3pqdD (D:)
mnkhvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqp
vktsygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflv
atnpvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgd
telpvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamsl
aritkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqfl
hsagvlknilkphfaeqkvnhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pqdD (D:)
hvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqpvkt
sygtyedckdadivcicalelveknlkifkgivsevmasgfdgiflvatnpvdiltyatw
kfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgdtelpvwshanvgg
vpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamslaritkailhnens
iltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqflhsagvlknilkph
f

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3pqdE (E:)
mnkhvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqp
vktsygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflv
atnpvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgd
telpvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamsl
aritkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqfl
hsagvlknilkphfaeqkvnhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pqdE (E:)
hvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqpvkt
sygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflvatn
pvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgdtel
pvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamslari
tkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqflhsa
gvlknilkphf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3pqdF (F:)
mnkhvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqp
vktsygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflv
atnpvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgd
telpvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamsl
aritkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqfl
hsagvlknilkphfaeqkvnhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pqdF (F:)
hvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqpvkt
sygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflvatn
pvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgdtel
pvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamslari
tkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqflhsa
gvlknilkphf

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3pqdG (G:)
mnkhvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqp
vktsygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflv
atnpvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgd
telpvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamsl
aritkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqfl
hsagvlknilkphfaeqkvnhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pqdG (G:)
nkhvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqpv
ktsygtyedckdadivcicaelveknlkifkgivsevmasgfdgiflvatnpvdiltyat
wkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgdtelpvwshanvg
gvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamslaritkailhnen
siltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqflhsagvlknilkp
hf

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3pqdH (H:)
mnkhvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqp
vktsygtyedckdadivcicaganqkpgetrlelveknlkifkgivsevmasgfdgiflv
atnpvdiltyatwkfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgd
telpvwshanvggvpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamsl
aritkailhnensiltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqfl
hsagvlknilkphfaeqkvnhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pqdH (H:)
khvnkvaligagfvgssyafalinqgitdelvvidvnkekamgdvmdlnhgkafapqpvk
tsygtyedckdadivcicaelveknlkifkgivsevmasgfdgiflvatnpvdiltyatw
kfsglpkervigsgttldsarfrfmlseyfgaapqnvhahiigehgdtelpvwshanvgg
vpvselvekndaykqeeldqivddvknaayhiiekkgatyygvamslaritkailhnens
iltvstyldgqygaddvyigvpavvnrggiagitelnlnekekeqflhsagvlknilkph
f