PDB entry 3pl6
View 3pl6 on RCSB PDB site
Description: Structure of Autoimmune TCR Hy.1B11 in complex with HLA-DQ1 and MBP 85-99
Class: immune system
Keywords: TCR-MHC complex, Immunoglobulin fold, Immune receptor, Membrane, IMMUNE SYSTEM
Deposited on
2010-11-13, released
2010-12-22
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-02-16, with a file datestamp of
2011-02-11.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.232
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: MHC class II HLA-DQ-alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DQA1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3pl6a1, d3pl6a2 - Chain 'B':
Compound: MHC class II HLA-DQ-beta chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DQB1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3pl6b1, d3pl6b2 - Chain 'C':
Compound: T-cell receptor alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3pl6c1, d3pl6c2 - Chain 'D':
Compound: MBP peptide / T-cell receptor beta chain chimera
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot D3YTB3 (Start-16)
- PDB 3PL6 (24-End)
- Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3pl6A (A:)
edivadhvascgvnlyqfygpsgqythefdgdeqfyvdlerketawrwpefskfggfdpq
galrnmavakhnlnimikrynstaatnevpevtvfskspvtlgqpntliclvdnifppvv
nitwlsngqsvtegvsetsflsksdhsffkisyltflpsadeiydckvehwgldqpllkh
wepeipapmselte
Sequence, based on observed residues (ATOM records): (download)
>3pl6A (A:)
divadhvascgvnlyqfygpsgqythefdgdeqfyvdlerketawrwpefskfggfdpqg
alrnmavakhnlnimikrynstaatnevpevtvfskspvtlgqpntliclvdnifppvvn
itwlsngqsvtegvsetsflsksdhsffkisyltflpsadeiydckvehwgldqpllkhw
ep
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3pl6B (B:)
egrdspedfvyqfkglcyftngtervrgvtrhiynreeyvrfdsdvgvyravtpqgrpva
eywnsqkevlegarasvdrvcrhnyevayrgilqrrveptvtispsrtealnhhnllics
vtdfypsqikvrwfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehp
slqspitvewraqsesaqskvd
Sequence, based on observed residues (ATOM records): (download)
>3pl6B (B:)
spedfvyqfkglcyftngtervrgvtrhiynreeyvrfdsdvgvyravtpqgrpvaeywn
sqkevlegarasvdrvcrhnyevayrgilqrrveptvtispsnllicsvtdfypsqikvr
wfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehpslqspitvewra
q
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3pl6C (C:)
enveqhpstlsvqegdsavikctysdsasnyfpwykqelgkrpqliidirsnvgekkdqr
iavtlnktakhfslhitetqpedsavyfcaassfgnekltfgtgtrltiipniqnpdpav
yqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnks
dfacanafnnsiipedtffpspesss
Sequence, based on observed residues (ATOM records): (download)
>3pl6C (C:)
enveqhpstlsvqegdsavikctysdsasnyfpwykqelgkrpqliidirsnvgekkdqr
iavtlnktakhfslhitetqpedsavyfcaassfgnekltfgtgtrltiipniqnpdpav
yqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnks
dfacanafnns
- Chain 'D':
No sequence available.