PDB entry 3pl2

View 3pl2 on RCSB PDB site
Description: Crystal structure of a 5-keto-2-deoxygluconokinase (NCgl0155, Cgl0158) from Corynebacterium glutamicum ATCC 13032 KITASATO at 1.89 A resolution
Class: transferase
Keywords: pfkb pfam motif, inositol phosphate metabolism, ribokinase-like fold, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-biology, transferase
Deposited on 2010-11-12, released 2010-11-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-20, with a file datestamp of 2011-07-15.
Experiment type: XRAY
Resolution: 1.89 Å
R-factor: 0.183
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sugar kinase, ribokinase family
    Species: Corynebacterium glutamicum [TaxId:1718]
    Gene: iolC, Cgl0158, cg0197
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pl2a_
  • Chain 'B':
    Compound: Sugar kinase, ribokinase family
    Species: Corynebacterium glutamicum [TaxId:1718]
    Gene: iolC, Cgl0158, cg0197
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pl2b_
  • Chain 'C':
    Compound: Sugar kinase, ribokinase family
    Species: Corynebacterium glutamicum [TaxId:1718]
    Gene: iolC, Cgl0158, cg0197
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pl2c_
  • Chain 'D':
    Compound: Sugar kinase, ribokinase family
    Species: Corynebacterium glutamicum [TaxId:1718]
    Gene: iolC, Cgl0158, cg0197
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pl2d_
  • Heterogens: CIT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3pl2A (A:)
gmtnltsthevlaigrlgvdiyplqsgvgladvqsfgkylggsaanvsvaaarhghnsal
lsrvgndpfgeyllaelerlgvdnqyvatdqtfktpvtfceifppddfplyfyrepkapd
lniesadvslddvreadilwftltgfseepsrgthreilttranrrhtifdldyrpmfwe
speeatkqaewalqhstvavgnkeeceiavgeteperagrallergvelaivkqgpkgvm
amtkdetvevppffvdvinglgagdafggalchgllsewplekvlrfantagalvasrle
cstampttdeveaslnqkv

    Sequence, based on observed residues (ATOM records): (download) 
    >3pl2A (A:)
sthevlaigrlgvdiyplqsgvgladvqsfgkylggsaanvsvaaarhghnsallsrvgn
dpfgeyllaelerlgvdnqyvatdqtfktpvtfceifppddfplyfyrepkapdlniesa
dvslddvreadilwftltgfseepsrgthreilttranrrhtifdldyrpmfwespeeat
kqaewalqhstvavgnkeeceiavgeteperagrallergvelaivkqgpkgvmamtkde
tvevppffvdvinglgagdafggalchgllsewplekvlrfantagalvasrlecstamp
ttdeveasln

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3pl2B (B:)
gmtnltsthevlaigrlgvdiyplqsgvgladvqsfgkylggsaanvsvaaarhghnsal
lsrvgndpfgeyllaelerlgvdnqyvatdqtfktpvtfceifppddfplyfyrepkapd
lniesadvslddvreadilwftltgfseepsrgthreilttranrrhtifdldyrpmfwe
speeatkqaewalqhstvavgnkeeceiavgeteperagrallergvelaivkqgpkgvm
amtkdetvevppffvdvinglgagdafggalchgllsewplekvlrfantagalvasrle
cstampttdeveaslnqkv

    Sequence, based on observed residues (ATOM records): (download) 
    >3pl2B (B:)
sthevlaigrlgvdiyplqsgvgladvqsfgkylggsaanvsvaaarhghnsallsrvgn
dpfgeyllaelerlgvdnqyvatdqtfktpvtfceifppddfplyfyrepkapdlniesa
dvslddvreadilwftltgfseepsrgthreilttranrrhtifdldyrpmfwespeeat
kqaewalqhstvavgnkeeceiavgeteperagrallergvelaivkqgpkgvmamtkde
tvevppffvdvinglgagdafggalchgllsewplekvlrfantagalvasrlecstamp
ttdeveasln

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3pl2C (C:)
gmtnltsthevlaigrlgvdiyplqsgvgladvqsfgkylggsaanvsvaaarhghnsal
lsrvgndpfgeyllaelerlgvdnqyvatdqtfktpvtfceifppddfplyfyrepkapd
lniesadvslddvreadilwftltgfseepsrgthreilttranrrhtifdldyrpmfwe
speeatkqaewalqhstvavgnkeeceiavgeteperagrallergvelaivkqgpkgvm
amtkdetvevppffvdvinglgagdafggalchgllsewplekvlrfantagalvasrle
cstampttdeveaslnqkv

    Sequence, based on observed residues (ATOM records): (download) 
    >3pl2C (C:)
sthevlaigrlgvdiyplqsgvgladvqsfgkylggsaanvsvaaarhghnsallsrvgn
dpfgeyllaelerlgvdnqyvatdqtfktpvtfceifppddfplyfyrepkapdlniesa
dvslddvreadilwftltgfseepsrgthreilttranrrhtifdldyrpmfwespeeat
kqaewalqhstvavgnkeeceiavgeteperagrallergvelaivkqgpkgvmamtkde
tvevppffvdvinglgagdafggalchgllsewplekvlrfantagalvasrlecstamp
ttdeveasln

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3pl2D (D:)
gmtnltsthevlaigrlgvdiyplqsgvgladvqsfgkylggsaanvsvaaarhghnsal
lsrvgndpfgeyllaelerlgvdnqyvatdqtfktpvtfceifppddfplyfyrepkapd
lniesadvslddvreadilwftltgfseepsrgthreilttranrrhtifdldyrpmfwe
speeatkqaewalqhstvavgnkeeceiavgeteperagrallergvelaivkqgpkgvm
amtkdetvevppffvdvinglgagdafggalchgllsewplekvlrfantagalvasrle
cstampttdeveaslnqkv

    Sequence, based on observed residues (ATOM records): (download) 
    >3pl2D (D:)
sthevlaigrlgvdiyplqsgvgladvqsfgkylggsaanvsvaaarhghnsallsrvgn
dpfgeyllaelerlgvdnqyvatdqtfktpvtfceifppddfplyfyrepkapdlniesa
dvslddvreadilwftltgfseepsrgthreilttranrrhtifdldyrpmfwespeeat
kqaewalqhstvavgnkeeceiavgeteperagrallergvelaivkqgpkgvmamtkde
tvevppffvdvinglgagdafggalchgllsewplekvlrfantagalvasrlecstamp
ttdeveasl