PDB entry 3pey

View 3pey on RCSB PDB site
Description: S. cerevisiae Dbp5 bound to RNA and ADP BeF3
Class: hydrolase/RNA
Keywords: RecA, DEAD-box, ATPase, Helicase, mRNA-export, Nuclear Pore, HYDROLASE-RNA complex
Deposited on 2010-10-27, released 2011-03-23
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-04-27, with a file datestamp of 2011-04-22.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: 0.161
AEROSPACI score: 0.71 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent RNA helicase DBP5
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: DBP5, RAT8, YOR046C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3peya1, d3peya2
  • Chain 'B':
    Compound: RNA (5'-r(p*up*up*up*up*up*u)-3')
  • Heterogens: ADP, MG, BEF, NO3, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3peyA (A:)
gamaksfdelglapellkgiyamkfqkpskiqeralplllhnpprnmiaqsqsgtgktaa
fsltmltrvnpedaspqaiclapsrelarqtlevvqemgkftkitsqlivpdsfeknkqi
naqvivgtpgtvldlmrrklmqlqkikifvldeadnmldqqglgdqcirvkrflpkdtql
vlfsatfadavrqyakkivpnantlelqtnevnvdaikqlymdckneadkfdvltelygl
mtigssiifvatkktanvlygklkseghevsilhgdlqtqerdrliddfregrskvlitt
nvlargidiptvsmvvnydlptlangqadpatyihrigrtgrfgrkgvaisfvhdknsfn
ilsaiqkyfgdiemtrvptddwdevekivkkvlkd

    Sequence, based on observed residues (ATOM records): (download) 
    >3peyA (A:)
aksfdelglapellkgiyamkfqkpskiqeralplllhnpprnmiaqsqsgtgktaafsl
tmltrvnpedaspqaiclapsrelarqtlevvqemgkftkitsqlivpdsfeknkqinaq
vivgtpgtvldlmrrklmqlqkikifvldeadnmldqqglgdqcirvkrflpkdtqlvlf
satfadavrqyakkivpnantlelqtnevnvdaikqlymdckneadkfdvltelyglmti
gssiifvatkktanvlygklkseghevsilhgdlqtqerdrliddfregrskvlittnvl
argidiptvsmvvnydlptlangqadpatyihrigrtgrfgrkgvaisfvhdknsfnils
aiqkyfgdiemtrvptddwdevekivkkvlk

  • Chain 'B':
    No sequence available.