PDB entry 3omi

View 3omi on RCSB PDB site
Description: Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with D132A mutation
Class: oxidoreductase
Keywords: transmembrane protein complex, oxidoreductase
Deposited on 2010-08-27, released 2011-02-02
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-05-02, with a file datestamp of 2012-04-27.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.193
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytochrome c oxidase, aa3 type, subunit I
    Species: Rhodobacter sphaeroides 2.4.1 [TaxId:272943]
    Gene: coxI, CTAD, RHOS4_04590, RSP_1877
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J5A7 (0-534)
      • engineered mutation (115)
    Domains in SCOPe 2.04: d3omia_
  • Chain 'B':
    Compound: Cytochrome c oxidase subunit 2
    Species: Rhodobacter sphaeroides 2.4.1 [TaxId:272943]
    Gene: coxII, CTAB, CTAC, RHOS4_04060, RSP_1826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J5G0 (0-251)
      • expression tag (252-255)
    Domains in SCOPe 2.04: d3omib1, d3omib2
  • Chain 'C':
    Compound: Cytochrome c oxidase, aa3 type, subunit I
    Species: Rhodobacter sphaeroides 2.4.1 [TaxId:272943]
    Gene: coxI, CTAD, RHOS4_04590, RSP_1877
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J5A7
      • engineered mutation (115)
    Domains in SCOPe 2.04: d3omic_
  • Chain 'D':
    Compound: Cytochrome c oxidase subunit 2
    Species: Rhodobacter sphaeroides 2.4.1 [TaxId:272943]
    Gene: coxII, CTAB, CTAC, RHOS4_04060, RSP_1826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J5G0 (0-251)
      • expression tag (252-255)
    Domains in SCOPe 2.04: d3omid1, d3omid2
  • Heterogens: OH, DMU, TRD, HEA, CU, MG, CA, CL, HTH, CU1, CD, FE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3omiA (A:)
    ftrwfmstnhkdigvlylftgglvglisvaftvymrmelmapgvqfmcaehlesglvkgf
    fqslwpsavenctpnghlwnvmitghgilmmffvvipalfggfgnyfmplhigapamafp
    rmnnlsywlyvagtslavaslfapggngqlgsgigwvlypplstsesgystdlaifavhl
    sgassilgainmittflnmrapgmtmhkvplfawsifvtawlillalpvlagaitmlltd
    rnfgttffqpsgggdpvlyqhilwffghpevyiivlpafgivshviatfakkpifgylpm
    vyamvaigvlgfvvwahhmytaglsltqqsyfmmatmviavptgikifswiatmwggsie
    lktpmlwalgflflftvggvtgivlsqasvdryyhdtyyvvahfhyvmslgavfgifagi
    yfwigkmsgrqypewagklhfwmmfvganltffpqhflgrqgmprryidypeafatwnfv
    sslgaflsfasflfflgvifytltrgarvtannywnehadtlewtltspppehtf
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3omiB (B:)
    leiigrpqpggtgfqpsaspvatqihwldgfilviiaaitifvtllilyavwrfhekrnk
    vparfthnspleiawtivpivilvaigafslpvlfnqqeipeadvtvkvtgyqwywgyey
    pdeeisfesymigspatggdnrmspeveqqlieagysrdefllatdtamvvpvnktvvvq
    vtgadvihswtvpafgvkqdavpgrlaqlwfraeregiffgqcselcgishaympitvkv
    vseeayaawleqhhhh
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3omiC (C:)
    ftrwfmstnhkdigvlylftgglvglisvaftvymrmelmapgvqfmcaehlesglvkgf
    fqslwpsavenctpnghlwnvmitghgilmmffvvipalfggfgnyfmplhigapamafp
    rmnnlsywlyvagtslavaslfapggngqlgsgigwvlypplstsesgystdlaifavhl
    sgassilgainmittflnmrapgmtmhkvplfawsifvtawlillalpvlagaitmlltd
    rnfgttffqpsgggdpvlyqhilwffghpevyiivlpafgivshviatfakkpifgylpm
    vyamvaigvlgfvvwahhmytaglsltqqsyfmmatmviavptgikifswiatmwggsie
    lktpmlwalgflflftvggvtgivlsqasvdryyhdtyyvvahfhyvmslgavfgifagi
    yfwigkmsgrqypewagklhfwmmfvganltffpqhflgrqgmprryidypeafatwnfv
    sslgaflsfasflfflgvifytltrgarvtannywnehadtlewtltspppehtf
    

    Sequence, based on observed residues (ATOM records): (download)
    >3omiC (C:)
    wfmstnhkdigvlylftgglvglisvaftvymrmelmapgvqfmcaehlesglvkgffqs
    lwpsavenctpnghlwnvmitghgilmmffvvipalfggfgnyfmplhigapamafprmn
    nlsywlyvagtslavaslfapggngqlgsgigwvlypplstsesgystdlaifavhlsga
    ssilgainmittflnmrapgmtmhkvplfawsifvtawlillalpvlagaitmlltdrnf
    gttffqpsgggdpvlyqhilwffghpevyiivlpafgivshviatfakkpifgylpmvya
    mvaigvlgfvvwahhmytaglsltqqsyfmmatmviavptgikifswiatmwggsielkt
    pmlwalgflflftvggvtgivlsqasvdryyhdtyyvvahfhyvmslgavfgifagiyfw
    igkmsgrqypewagklhfwmmfvganltffpqhflgrqgmprryidypeafatwnfvssl
    gaflsfasflfflgvifytltrgarvtannywnehadtlewtltspppeh
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3omiD (D:)
    leiigrpqpggtgfqpsaspvatqihwldgfilviiaaitifvtllilyavwrfhekrnk
    vparfthnspleiawtivpivilvaigafslpvlfnqqeipeadvtvkvtgyqwywgyey
    pdeeisfesymigspatggdnrmspeveqqlieagysrdefllatdtamvvpvnktvvvq
    vtgadvihswtvpafgvkqdavpgrlaqlwfraeregiffgqcselcgishaympitvkv
    vseeayaawleqhhhh