PDB entry 3oma

View 3oma on RCSB PDB site
Description: Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with K362M mutation
Class: oxidoreductase
Keywords: transmembrane protein complex, oxidoreductase
Deposited on 2010-08-26, released 2011-02-02
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-05-02, with a file datestamp of 2012-04-27.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.192
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytochrome c oxidase, aa3 type, subunit I
    Species: Rhodobacter sphaeroides 2.4.1 [TaxId:272943]
    Gene: coxI, CTAD, RHOS4_04590, RSP_1877
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J5A7 (0-534)
      • engineered mutation (345)
    Domains in SCOPe 2.04: d3omaa_
  • Chain 'B':
    Compound: Cytochrome c oxidase subunit 2
    Species: Rhodobacter sphaeroides 2.4.1 [TaxId:272943]
    Gene: coxII, CTAB, CTAC, RHOS4_04060, RSP_1826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J5G0 (0-251)
      • expression tag (252-255)
    Domains in SCOPe 2.04: d3omab1, d3omab2
  • Chain 'C':
    Compound: Cytochrome c oxidase, aa3 type, subunit I
    Species: Rhodobacter sphaeroides 2.4.1 [TaxId:272943]
    Gene: coxI, CTAD, RHOS4_04590, RSP_1877
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J5A7
      • engineered mutation (345)
    Domains in SCOPe 2.04: d3omac_
  • Chain 'D':
    Compound: Cytochrome c oxidase subunit 2
    Species: Rhodobacter sphaeroides 2.4.1 [TaxId:272943]
    Gene: coxII, CTAB, CTAC, RHOS4_04060, RSP_1826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3J5G0 (0-251)
      • expression tag (252-255)
    Domains in SCOPe 2.04: d3omad1, d3omad2
  • Heterogens: OH, DMU, TRD, HEA, CU, MG, CA, HTH, CU1, CD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3omaA (A:)
ftrwfmstnhkdigvlylftgglvglisvaftvymrmelmapgvqfmcaehlesglvkgf
fqslwpsavenctpnghlwnvmitghgilmmffvvipalfggfgnyfmplhigapdmafp
rmnnlsywlyvagtslavaslfapggngqlgsgigwvlypplstsesgystdlaifavhl
sgassilgainmittflnmrapgmtmhkvplfawsifvtawlillalpvlagaitmlltd
rnfgttffqpsgggdpvlyqhilwffghpevyiivlpafgivshviatfakkpifgylpm
vyamvaigvlgfvvwahhmytaglsltqqsyfmmatmviavptgimifswiatmwggsie
lktpmlwalgflflftvggvtgivlsqasvdryyhdtyyvvahfhyvmslgavfgifagi
yfwigkmsgrqypewagklhfwmmfvganltffpqhflgrqgmprryidypeafatwnfv
sslgaflsfasflfflgvifytltrgarvtannywnehadtlewtltspppehtf

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3omaB (B:)
leiigrpqpggtgfqpsaspvatqihwldgfilviiaaitifvtllilyavwrfhekrnk
vparfthnspleiawtivpivilvaigafslpvlfnqqeipeadvtvkvtgyqwywgyey
pdeeisfesymigspatggdnrmspeveqqlieagysrdefllatdtamvvpvnktvvvq
vtgadvihswtvpafgvkqdavpgrlaqlwfraeregiffgqcselcgishaympitvkv
vseeayaawleqhhhh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3omaC (C:)
ftrwfmstnhkdigvlylftgglvglisvaftvymrmelmapgvqfmcaehlesglvkgf
fqslwpsavenctpnghlwnvmitghgilmmffvvipalfggfgnyfmplhigapdmafp
rmnnlsywlyvagtslavaslfapggngqlgsgigwvlypplstsesgystdlaifavhl
sgassilgainmittflnmrapgmtmhkvplfawsifvtawlillalpvlagaitmlltd
rnfgttffqpsgggdpvlyqhilwffghpevyiivlpafgivshviatfakkpifgylpm
vyamvaigvlgfvvwahhmytaglsltqqsyfmmatmviavptgimifswiatmwggsie
lktpmlwalgflflftvggvtgivlsqasvdryyhdtyyvvahfhyvmslgavfgifagi
yfwigkmsgrqypewagklhfwmmfvganltffpqhflgrqgmprryidypeafatwnfv
sslgaflsfasflfflgvifytltrgarvtannywnehadtlewtltspppehtf

    Sequence, based on observed residues (ATOM records): (download) 
    >3omaC (C:)
wfmstnhkdigvlylftgglvglisvaftvymrmelmapgvqfmcaehlesglvkgffqs
lwpsavenctpnghlwnvmitghgilmmffvvipalfggfgnyfmplhigapdmafprmn
nlsywlyvagtslavaslfapggngqlgsgigwvlypplstsesgystdlaifavhlsga
ssilgainmittflnmrapgmtmhkvplfawsifvtawlillalpvlagaitmlltdrnf
gttffqpsgggdpvlyqhilwffghpevyiivlpafgivshviatfakkpifgylpmvya
mvaigvlgfvvwahhmytaglsltqqsyfmmatmviavptgimifswiatmwggsielkt
pmlwalgflflftvggvtgivlsqasvdryyhdtyyvvahfhyvmslgavfgifagiyfw
igkmsgrqypewagklhfwmmfvganltffpqhflgrqgmprryidypeafatwnfvssl
gaflsfasflfflgvifytltrgarvtannywnehadtlewtltspppeht

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3omaD (D:)
leiigrpqpggtgfqpsaspvatqihwldgfilviiaaitifvtllilyavwrfhekrnk
vparfthnspleiawtivpivilvaigafslpvlfnqqeipeadvtvkvtgyqwywgyey
pdeeisfesymigspatggdnrmspeveqqlieagysrdefllatdtamvvpvnktvvvq
vtgadvihswtvpafgvkqdavpgrlaqlwfraeregiffgqcselcgishaympitvkv
vseeayaawleqhhhh