PDB entry 3olb

View 3olb on RCSB PDB site
Description: Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctp
Class: transferase/RNA
Keywords: RNA-dependent RNA polymerase, elongation complex, virus, protein-RNA complex, TRANSFERASE-RNA complex
Deposited on 2010-08-25, released 2010-12-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polymerase
    Species: Human poliovirus 1 [TaxId:12080]
    Gene: 3D
    Database cross-references and differences (RAF-indexed):
    • Uniprot B3VQP5 (0-460)
      • engineered mutation (445)
    Domains in SCOPe 2.08: d3olba_
  • Chain 'B':
    Compound: RNA (5'-r(*ap*ap*gp*up*cp*u*cp*cp*ap*gp*gp*up*cp*up*cp*up*cp*gp*up*cp*cp*gp*gp*ap*ap*a)-3')
    Species: synthetic, synthetic
  • Chain 'C':
    Compound: RNA (5'-r(*gp*cp*cp*cp*gp*gp*ap*cp*gp*ap*gp*ap*gp*a)-3')
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: RNA (5'-r(*gp*gp*gp*ap*gp*ap*up*gp*a)-3')
    Species: synthetic, synthetic
  • Chain 'E':
    Compound: Polymerase
    Species: Human poliovirus 1 [TaxId:12080]
    Gene: 3D
    Database cross-references and differences (RAF-indexed):
    • Uniprot B3VQP5 (0-460)
      • engineered mutation (445)
    Domains in SCOPe 2.08: d3olbe_
  • Chain 'F':
    Compound: RNA (5'-r(*ap*ap*gp*up*cp*u*cp*cp*ap*gp*gp*up*cp*up*cp*up*cp*gp*up*cp*cp*gp*gp*ap*ap*a)-3')
    Species: synthetic, synthetic
  • Chain 'G':
    Compound: RNA (5'-r(*gp*cp*cp*cp*gp*gp*ap*cp*gp*ap*gp*ap*gp*a)-3')
    Species: synthetic, synthetic
  • Chain 'H':
    Compound: RNA (5'-r(*gp*gp*gp*ap*gp*ap*up*gp*a)-3')
    Species: synthetic, synthetic
  • Chain 'I':
    Compound: Polymerase
    Species: Human poliovirus 1 [TaxId:12080]
    Gene: 3D
    Database cross-references and differences (RAF-indexed):
    • Uniprot B3VQP5 (0-460)
      • engineered mutation (445)
    Domains in SCOPe 2.08: d3olbi_
  • Chain 'J':
    Compound: RNA (5'-r(*ap*ap*gp*up*cp*u*cp*cp*ap*gp*gp*up*cp*up*cp*up*cp*gp*up*cp*cp*gp*gp*ap*ap*a)-3')
    Species: synthetic, synthetic
  • Chain 'K':
    Compound: RNA (5'-r(*gp*cp*cp*cp*gp*gp*ap*cp*gp*ap*gp*ap*gp*a)-3')
    Species: synthetic, synthetic
  • Chain 'L':
    Compound: RNA (5'-r(*gp*gp*gp*ap*gp*ap*up*gp*a)-3')
    Species: synthetic, synthetic
  • Chain 'M':
    Compound: Polymerase
    Species: Human poliovirus 1 [TaxId:12080]
    Gene: 3D
    Database cross-references and differences (RAF-indexed):
    • Uniprot B3VQP5 (0-460)
      • engineered mutation (445)
    Domains in SCOPe 2.08: d3olbm_
  • Chain 'N':
    Compound: RNA (5'-r(*ap*ap*gp*up*cp*u*cp*cp*ap*gp*gp*up*cp*up*cp*up*cp*gp*up*cp*cp*gp*gp*ap*ap*a)-3')
    Species: synthetic, synthetic
  • Chain 'O':
    Compound: RNA (5'-r(*gp*cp*cp*cp*gp*gp*ap*cp*gp*ap*gp*ap*gp*a)-3')
    Species: synthetic, synthetic
  • Chain 'P':
    Compound: RNA (5'-r(*gp*gp*gp*ap*gp*ap*up*gp*a)-3')
    Species: synthetic, synthetic
  • Heterogens: ZN, DCT, IPA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3olbA (A:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsfgssshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3olbA (A:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsf

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3olbE (E:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsfgssshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3olbE (E:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsf

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3olbI (I:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsfgssshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3olbI (I:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsf

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >3olbM (M:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsfgssshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3olbM (M:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsf

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.