PDB entry 3ogo

View 3ogo on RCSB PDB site
Description: Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212
Class: fluorescent protein/immune system
Keywords: GFP, GFP-nanobody, beta-barrel, antibody, LUMINESCENT PROTEIN-IMMUNE SYSTEM complex, FLUORESCENT PROTEIN-IMMUNE SYSTEM complex
Deposited on 2010-08-17, released 2010-08-25
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-01-12, with a file datestamp of 2011-01-07.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.204
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • engineered (74)
      • chromophore (75)
      • engineered (241)
    Domains in SCOPe 2.07: d3ogoa_
  • Chain 'B':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • engineered (74)
      • chromophore (75)
    Domains in SCOPe 2.07: d3ogob_
  • Chain 'C':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • engineered (74)
      • chromophore (75)
      • engineered (241)
    Domains in SCOPe 2.07: d3ogoc_
  • Chain 'D':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • engineered (74)
      • chromophore (75)
    Domains in SCOPe 2.07: d3ogod_
  • Chain 'E':
    Compound: GFP-nanobody
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3OGO
    Domains in SCOPe 2.07: d3ogoe_
  • Chain 'F':
    Compound: GFP-nanobody
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3OGO
    Domains in SCOPe 2.07: d3ogof_
  • Chain 'G':
    Compound: GFP-nanobody
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3OGO (0-End)
    Domains in SCOPe 2.07: d3ogog_
  • Chain 'H':
    Compound: GFP-nanobody
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed):
    • PDB 3OGO
    Domains in SCOPe 2.07: d3ogoh1, d3ogoh2
  • Heterogens: IPA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ogoA (A:)
    mahhhhhhssgvskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkfict
    tgklpvpwptlvttlgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktr
    aevkfegdtlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirh
    niedgsvqladhyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagi
    tlgmdelyk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ogoA (A:)
    skgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlv
    ttlgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvn
    rielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqladh
    yqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagitlgmde
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ogoB (B:)
    mahhhhhhssgvskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkfict
    tgklpvpwptlvttlgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktr
    aevkfegdtlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirh
    niedgsvqladhyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagi
    tlgmdelyk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ogoB (B:)
    kgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlvt
    tlgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvnr
    ielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqladhy
    qqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagi
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3ogoC (C:)
    mahhhhhhssgvskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkfict
    tgklpvpwptlvttlgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktr
    aevkfegdtlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirh
    niedgsvqladhyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagi
    tlgmdelyk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ogoC (C:)
    skgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlv
    ttlgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvn
    rielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqladh
    yqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagitl
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3ogoD (D:)
    mahhhhhhssgvskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkfict
    tgklpvpwptlvttlgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktr
    aevkfegdtlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirh
    niedgsvqladhyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagi
    tlgmdelyk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ogoD (D:)
    kgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlvt
    tlgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvnr
    ielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqladhy
    qqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagit
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3ogoE (E:)
    mqvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrss
    yedsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvsskhhh
    hhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ogoE (E:)
    qvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrssy
    edsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvss
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3ogoF (F:)
    mqvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrss
    yedsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvsskhhh
    hhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ogoF (F:)
    qvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrssy
    edsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvss
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3ogoG (G:)
    mqvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrss
    yedsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvsskhhh
    hhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ogoG (G:)
    mqvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrss
    yedsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvss
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3ogoH (H:)
    mqvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrss
    yedsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvsskhhh
    hhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ogoH (H:)
    qvqlvesggalvqpggslrlscaasgfpvnrysmrwyrqapgkerewvagmssagdrssy
    edsvkgrftisrddarntvylqmnslkpedtavyycnvnvgfeywgqgtqvtvssk