PDB entry 3ogg
View 3ogg on RCSB PDB site
Description: Crystal structure of the receptor binding domain of botulinum neurotoxin D
Class: toxin
Keywords: Botulinum neurotoxin, serotype D, receptor binding domain, jelly roll trefoil fold, receptor binding, gangliosides, membrane to cytoplasm, TOXIN
Deposited on
2010-08-16, released
2010-09-01
The last revision prior to the SCOPe 2.05 freeze date was dated
2010-12-15, with a file datestamp of
2010-12-10.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: 0.173
AEROSPACI score: 0.59
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Botulinum neurotoxin type D
Species: Clostridium botulinum [TaxId:1491]
Gene: botD, Botulinum Neurotoxin D
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3ogga1, d3ogga2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3oggA (A:)
sindskilslqnkknalvdtsgynaevrvgdnvqlntiytndfklsssgdkiivnlnnni
lysaiyenssvsfwikiskdltnshneytiinsieqnsgwklcirngniewilqdvnrky
kslifdyseslshtgytnkwffvtitnnimgymklyingelkqsqkiedldevkldktiv
fgidenidenqmlwirdfnifskelsnedinivyegqilrnvikdywgnplkfdteyyii
ndnyidryiapesnvlvlvqypdrsklytgnpitiksvsdknpysrilngdniilhmlyn
srkymiirdtdtiyatqggecsqncvyalklqsnlgnygigifsiknivsknkycsqifs
sfrentmlladiykpwrfsfknaytpvavtnyetkllstssfwkfisrdpgwve
Sequence, based on observed residues (ATOM records): (download)
>3oggA (A:)
sindskilslqnkknalvdtsgynaevrvgdnvqlntiytndfklsssgdkiivnlnnni
lysaiyenssvsfwikiskdltnshneytiinsieqnsgwklcirngniewilqdvnrky
kslifdyseslshtgytnkwffvtitnnimgymklyingelkqsqkiedldevkldktiv
fgidenidenqmlwirdfnifskelsnedinivyegqilrnvikdywgnplkfdteyyii
ndnyidryiapesnvlvlvqypdrsklytgnpitiksvsdknpysrilngdniilhmlyn
srkymiirdtdtincvyalklqsnlgnygigifsiknivsknkycsqifssfrentmlla
diykpwrfsfknaytpvavtnyetkllstssfwkfisrdpgwve