PDB entry 3o4f

View 3o4f on RCSB PDB site
Description: Crystal Structure of Spermidine Synthase from E. coli
Class: transferase
Keywords: aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase
Deposited on 2010-07-27, released 2010-08-18
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-08-18, with a file datestamp of 2010-08-13.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.21
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3o4fa_
  • Chain 'B':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3o4fb_
  • Chain 'C':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3o4fc_
  • Chain 'D':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3o4fd_
  • Chain 'E':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3o4fe_
  • Chain 'F':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3o4ff_
  • Chain 'G':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3o4fg_
  • Chain 'H':
    Compound: spermidine synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: SPEE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3o4fh_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3o4fA (A:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3o4fA (A:)
kkqwhetlhdqfgqyfavdnvlyhekqdliifenaafgrvmaldgvvqtterdefiyhem
mthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhna
gsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsafyegckrclnpgg
ifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhls
teiiqarflasglkcryynpaihtaafalpqylqdalasqps

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3o4fB (B:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3o4fB (B:)
kqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiyh
emmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnh
nagsyddprfklviddgvnfvnqtsqtfdviisdcftsafyegckrclnpggifvaqngv
cflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarf
lasglkcryynpaihtaafalpqylqdala

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3o4fC (C:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3o4fC (C:)
kkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiy
hemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpn
hnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsafyegckrcln
pggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfawatdndalr
hlsteiiqarflasglkcryynpaihtaafalpqylqdalasqp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3o4fD (D:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3o4fD (D:)
kkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiy
hemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpn
hnagsyddprfklviddgvnfvnqtsqtfdviisdctdeslftsafyegckrclnpggif
vaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlste
iiqarflasglkcryynpaihtaafalpqylqdala

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3o4fE (E:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3o4fE (E:)
kqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvqtterdefiyh
emmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnh
nagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsafyegckrclnp
ggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfawatdndalrh
lsteiiqarflasglkcryynpaihtaafalpqylqdalasqp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3o4fF (F:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3o4fF (F:)
kqwhetlhdqfgqyfavdnvlyheqdliifenaafgrvmaldgvvqtterdefiyhemmt
hvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhnags
yddprfklviddgvnfvnqtsqtfdviisdctdtsafyegckrclnpggifvaqngvcfl
qqeeaidshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarflas
glkcryynpaihtaafalpqylqdalasq

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3o4fG (G:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3o4fG (G:)
kqwhetlhdqfgqyfavdnvlyheqdliifenaafgrvmaldgvvqtterdefiyhemmt
hvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhnags
yddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsafyegckrclnpggif
vaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlste
iiqarflasglkcryynpaihtaafalpqylqdalasqp

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3o4fH (H:)
hhhhhhmaekkqwhetlhdqfgqyfavdnvlyhektdhqdliifenaafgrvmaldgvvq
tterdefiyhemmthvpllahghakhvliigggdgamlrevtrhknvesitmveidagvv
sfcrqylpnhnagsyddprfklviddgvnfvnqtsqtfdviisdctdpigpgeslftsaf
yegckrclnpggifvaqngvcflqqeeaidshrklshyfsdvgfyqaaiptyyggimtfa
watdndalrhlsteiiqarflasglkcryynpaihtaafalpqylqdalasqps

    Sequence, based on observed residues (ATOM records): (download) 
    >3o4fH (H:)
kqwhetlhdqfgqyfavdnvlyheqdliifenaafgrvmaldgvvqtterdefiyhemmt
hvpllahghakhvliigggdgamlrevtrhknvesitmveidagvvsfcrqylpnhnags
yddprfklviddgvnfvnqtsqtfdviisdctsafyegckrclnpggifvaqngvcflqq
eeaidshrklshyfsdvgfyqaaiptyyggimtfawatdndalrhlsteiiqarflasgl
kcryynpaihtaafalpqylqdal