PDB entry 3o2d
View 3o2d on RCSB PDB site
Description: Crystal structure of HIV-1 primary receptor CD4 in complex with a potent antiviral antibody
Class: immune system
Keywords: immunoglobulin fold, HIV-1 primary receptor, T cell coreceptor, monoclonal antibody, Membrane, IMMUNE SYSTEM
Deposited on
2010-07-22, released
2010-12-22
The last revision prior to the SCOPe 2.07 freeze date was dated
2010-12-22, with a file datestamp of
2010-12-17.
Experiment type: XRAY
Resolution: 2.19 Å
R-factor: 0.194
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T-cell surface glycoprotein cd4
Species: Homo sapiens [TaxId:9606]
Gene: CD4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3o2da1, d3o2da2 - Chain 'H':
Compound: ibalizumab heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: ibalizumab light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3o2dl1, d3o2dl2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3o2dA (A:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvlafq
kahhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3o2dA (A:)
kkvvlgkkgdtveltctasqkksiqfhwknsnqikilgnqgsfltkgpsklndradsrrs
lwdqgnfpliiknlkiedsdtyicevedqkeevqllvfgltansdthllqgqsltltles
ppgsspsvqcrsprgkniqggktlsvsqlelqdsgtwtctvlqnqkkvefkidivvla
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3o2dL (L:)
divmtqspdslavslgervtmnckssqsllystnqknylawyqqkpgqspklliywastr
esgvpdrfsgsgsgtdftltissvqaedvavyycqqyysyrtfgggtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3o2dL (L:)
divmtqspdslavslgervtmnckssqsllystnqknylawyqqkpgqspklliywastr
esgvpdrfsgsgsgtdftltissvqaedvavyycqqyysyrtfgggtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnr