PDB entry 3nyd

View 3nyd on RCSB PDB site
Description: Crystal Structure of Kemp Eliminase HG-2 Complexed with Transition State Analog 5-Nitro Benzotriazole
Class: Hydrolase
Keywords: Tim Barrel, Kemp Elimination Enzyme, Hydrolase
Deposited on 2010-07-14, released 2011-06-29
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-04-25, with a file datestamp of 2012-04-20.
Experiment type: XRAY
Resolution: 1.23 Å
R-factor: 0.159
AEROSPACI score: 0.72 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: endo-1,4-beta-xylanase
    Species: THERMOASCUS AURANTIACUS [TaxId:5087]
    Gene: Xylanase I, XYNA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P23360 (0-302)
      • engineered mutation (0)
      • engineered mutation (41)
      • engineered mutation (43)
      • engineered mutation (80)
      • engineered mutation (82-83)
      • engineered mutation (129)
      • engineered mutation (171)
      • engineered mutation (233)
      • engineered mutation (235-236)
      • engineered mutation (264)
      • engineered mutation (266)
      • expression tag (303)
    Domains in SCOPe 2.04: d3nyda_
  • Chain 'B':
    Compound: endo-1,4-beta-xylanase
    Species: THERMOASCUS AURANTIACUS [TaxId:5087]
    Gene: Xylanase I, XYNA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P23360 (Start-302)
      • engineered mutation (41)
      • engineered mutation (43)
      • engineered mutation (80)
      • engineered mutation (82-83)
      • engineered mutation (129)
      • engineered mutation (171)
      • engineered mutation (233)
      • engineered mutation (235-236)
      • engineered mutation (264)
      • engineered mutation (266)
    Domains in SCOPe 2.04: d3nydb_
  • Heterogens: 3NY, ACT, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3nydA (A:)
eaaqsvdqlikargkvyfgvatdqnrlttgknaaiiqadfgmvwpensmkwdatepsqgn
fnfagadylvnwaqqngkligggmlvwhsqlpswvssitdkntltnvmknhittlmtryk
gkirawdvvgeafnedgslrqtvflnvigedyipiafqtaraadpnaklyimdynldsas
ypktqaivnrvkqwraagvpidgigsqthlsagqgagvlqalpllasagtpevsilmldv
agasptdyvnvvnaclnvqscvgisvfgvadpdswrasttpllfdgnfnpkpaynaivqd
lqqgsiegrghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3nydA (A:)
eaaqsvdqlikargkvyfgvatdqnrlttgknaaiiqadfgmvwpensmkwdatepsqgn
fnfagadylvnwaqqngkligggmlvwhsqlpswvssitdkntltnvmknhittlmtryk
gkirawdvvgeafnedgslrqtvflnvigedyipiafqtaraadpnaklyimdynldsas
ypktqaivnrvkqwraagvpidgigsqthlsagqgagvlqalpllasagtpevsilmldv
agasptdyvnvvnaclnvqscvgisvfgvadpdswrasttpllfdgnfnpkpaynaivqd
lqqg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3nydB (B:)
eaaqsvdqlikargkvyfgvatdqnrlttgknaaiiqadfgmvwpensmkwdatepsqgn
fnfagadylvnwaqqngkligggmlvwhsqlpswvssitdkntltnvmknhittlmtryk
gkirawdvvgeafnedgslrqtvflnvigedyipiafqtaraadpnaklyimdynldsas
ypktqaivnrvkqwraagvpidgigsqthlsagqgagvlqalpllasagtpevsilmldv
agasptdyvnvvnaclnvqscvgisvfgvadpdswrasttpllfdgnfnpkpaynaivqd
lqqgsiegrghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3nydB (B:)
aqsvdqlikargkvyfgvatdqnrlttgknaaiiqadfgmvwpensmkwdatepsqgnfn
fagadylvnwaqqngkligggmlvwhsqlpswvssitdkntltnvmknhittlmtrykgk
irawdvvgeafnedgslrqtvflnvigedyipiafqtaraadpnaklyimdynldsasyp
ktqaivnrvkqwraagvpidgigsqthlsagqgagvlqalpllasagtpevsilmldvag
asptdyvnvvnaclnvqscvgisvfgvadpdswrasttpllfdgnfnpkpaynaivqdlq
q