PDB entry 3nob

View 3nob on RCSB PDB site
Description: Structure of K11-linked di-ubiquitin
Class: protein binding
Keywords: Ubiquitin Lysine-11, PROTEIN BINDING
Deposited on 2010-06-25, released 2010-08-11
The last revision prior to the SCOPe 2.04 freeze date was dated 2014-04-02, with a file datestamp of 2014-03-28.
Experiment type: XRAY
Resolution: 2.19 Å
R-factor: 0.247
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (2-End)
      • expression tag (0-1)
    Domains in SCOPe 2.04: d3noba_
  • Chain 'B':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3nobb_
  • Chain 'C':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.04: d3nobc_
  • Chain 'D':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.04: d3nobd_
  • Chain 'E':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.04: d3nobe_
  • Chain 'F':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3nobf_
  • Chain 'G':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3nobg_
  • Chain 'H':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (2-77)
      • expression tag (1)
    Domains in SCOPe 2.04: d3nobh_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3nobA (A:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nobA (A:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3nobB (B:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nobB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlr
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3nobC (C:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nobC (C:)
    hmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
    niqkestlhlvlrlr
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3nobD (D:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nobD (D:)
    hmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
    niqkestlhlvlrlr
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3nobE (E:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nobE (E:)
    hmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
    niqkestlhlvlrlr
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3nobF (F:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nobF (F:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3nobG (G:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nobG (G:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrg
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3nobH (H:)
    shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nobH (H:)
    hmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
    niqkestlhlvlrlrgg