PDB entry 3nmu

View 3nmu on RCSB PDB site
Description: Crystal Structure of substrate-bound halfmer box C/D RNP
Class: Transferase/RNA
Keywords: Kink-turn motif, RNA assembly motif, Transferase-RNA complex
Deposited on 2010-06-22, released 2011-05-25
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-05-25, with a file datestamp of 2011-05-20.
Experiment type: XRAY
Resolution: 2.73 Å
R-factor: 0.224
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: NOP5/NOP56 related protein
  Species: Pyrococcus furiosus [TaxId:2261]
  Gene: PF0060
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8U4M1 (13-378)
• Chain 'B':
  Compound: NOP5/NOP56 related protein
  Species: Pyrococcus furiosus [TaxId:2261]
  Gene: PF0060
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8U4M1 (13-378)
• Chain 'C':
  Compound: 50S ribosomal protein L7Ae
  Species: Pyrococcus furiosus [TaxId:2261]
  Gene: rpl7ae, PF1367
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8U160 (8-128)
• Chain 'D':
  Compound: RNA (34-mer)
  Species: Pyrococcus furiosus [TaxId:2261]
  
• Chain 'E':
  Compound: RNA (34-mer)
  Species: Pyrococcus furiosus [TaxId:2261]
  
• Chain 'F':
  Compound: Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase
  Species: Pyrococcus furiosus [TaxId:2261]
  Gene: flpA, PF0059
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8U4M2 (7-233)
  Domains in SCOPe 2.03: d3nmuf_
• Chain 'G':
  Compound: 50S ribosomal protein L7Ae
  Species: Pyrococcus furiosus [TaxId:2261]
  Gene: rpl7ae, PF1367
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8U160 (8-128)
• Chain 'I':
  Compound: RNA (5'-r(*gp*ap*gp*cp*up*up*cp*ap*ap*cp*gp*gp*c)-3')
  Species: synthetic, synthetic [TaxId:32630]
  
• Chain 'J':
  Compound: Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase
  Species: Pyrococcus furiosus [TaxId:2261]
  Gene: flpA, PF0059
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8U4M2 (7-233)
  Domains in SCOPe 2.03: d3nmuj_
• Chain 'K':
  Compound: RNA (5'-r(*gp*ap*gp*cp*up*up*cp*ap*ap*cp*gp*gp*c)-3')
  Species: synthetic, synthetic [TaxId:32630]
  
• Heterogens: SAM, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  Sequence, based on SEQRES records: (download)
  

  >3nmuF (F:)
  mhhhhhhmvevkkhkfpgvyvvidddgsekiatknlvpgqrvygervikwegeeyriwnp
  hrsklgaaivnglknfpikpgksvlylgiasgttashvsdivgwegkiygiefsprvlre
  lvpiveerrniipilgdatkpeeyralvtkvdvifedvaqptqakilidnakaylkrggy
  gmiavksrsidvtkepeqvfkeverelseyfevierlnlepyekdhalfvvrkp
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3nmuF (F:)
  mvevkkhkfpgvyvvidddgsekiatknlvpgqrvygervikwegeeyriwnphrsklga
  aivnglknfpikpgksvlylgiasgttashvsdivgwegkiygiefsprvlrelvpivee
  rrniipilgdatkpeeyralvtkvdvifedvaqptqakilidnakaylkrggygmiavks
  rsidvtkepeqvfkeverelseyfevierlnlepyekdhalfvvrkp
  

  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  Sequence, based on SEQRES records: (download)
  

  >3nmuJ (J:)
  mhhhhhhmvevkkhkfpgvyvvidddgsekiatknlvpgqrvygervikwegeeyriwnp
  hrsklgaaivnglknfpikpgksvlylgiasgttashvsdivgwegkiygiefsprvlre
  lvpiveerrniipilgdatkpeeyralvtkvdvifedvaqptqakilidnakaylkrggy
  gmiavksrsidvtkepeqvfkeverelseyfevierlnlepyekdhalfvvrkp
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3nmuJ (J:)
  mvevkkhkfpgvyvvidddgsekiatknlvpgqrvygervikwegeeyriwnphrsklga
  aivnglknfpikpgksvlylgiasgttashvsdivgwegkiygiefsprvlrelvpivee
  rrniipilgdatkpeeyralvtkvdvifedvaqptqakilidnakaylkrggygmiavks
  rsidvtkepeqvfkeverelseyfevierlnlepyekdhalfvvrkp
  

  
  
• Chain 'K':
  No sequence available.