PDB entry 3ndy

View 3ndy on RCSB PDB site
Description: The structure of the catalytic and carbohydrate binding domain of endoglucanase D from Clostridium cellulovorans
Class: hydrolase
Keywords: cellulase, endoglucanase, xylanase, carbohydrate binding domain, glucanase, HYDROLASE
Deposited on 2010-06-08, released 2010-09-08
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-09-08, with a file datestamp of 2010-09-03.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.149
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Endoglucanase D
    Species: Clostridium cellulovorans [TaxId:1493]
    Gene: engD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ndya_
  • Chain 'B':
    Compound: Endoglucanase D
    Species: Clostridium cellulovorans [TaxId:1493]
    Gene: engD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ndyb_
  • Chain 'C':
    Compound: Endoglucanase D
    Species: Clostridium cellulovorans [TaxId:1493]
    Gene: engD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ndyc_
  • Chain 'D':
    Compound: Endoglucanase D
    Species: Clostridium cellulovorans [TaxId:1493]
    Gene: engD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ndyd_
  • Chain 'E':
    Compound: Endoglucanase D
    Species: Clostridium cellulovorans [TaxId:1493]
    Gene: engD
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Endoglucanase D
    Species: Clostridium cellulovorans [TaxId:1493]
    Gene: engD
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Endoglucanase D
    Species: Clostridium cellulovorans [TaxId:1493]
    Gene: engD
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Endoglucanase D
    Species: Clostridium cellulovorans [TaxId:1493]
    Gene: engD
    Database cross-references and differences (RAF-indexed):
  • Heterogens: BTB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3ndyA (A:)
staftgvrdvpaqqivnemkvgwnlgntmdaiggetnwgnpmtthaminkikeagfntlr
lpvtwdghmgaapeytidqtwmkrveeianyafdndmyviinlhhenewlkpfyaneaqv
kaqltkvwtqiannfkkygdhlifetmneprpvgaslqwtggsyenrevvnrynltavna
iratggnnatryimvptlaasamsttindlvipnndskvivslhmyspyffamdingtss
wgsdydkssldsefdavynkfvkngravvigemgsinknntaarvthaeyyaksakargl
tpiwwdngysvagkaetfgifnrsnltwdapevmkafikgiggss

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3ndyB (B:)
staftgvrdvpaqqivnemkvgwnlgntmdaiggetnwgnpmtthaminkikeagfntlr
lpvtwdghmgaapeytidqtwmkrveeianyafdndmyviinlhhenewlkpfyaneaqv
kaqltkvwtqiannfkkygdhlifetmneprpvgaslqwtggsyenrevvnrynltavna
iratggnnatryimvptlaasamsttindlvipnndskvivslhmyspyffamdingtss
wgsdydkssldsefdavynkfvkngravvigemgsinknntaarvthaeyyaksakargl
tpiwwdngysvagkaetfgifnrsnltwdapevmkafikgiggss

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ndyC (C:)
staftgvrdvpaqqivnemkvgwnlgntmdaiggetnwgnpmtthaminkikeagfntlr
lpvtwdghmgaapeytidqtwmkrveeianyafdndmyviinlhhenewlkpfyaneaqv
kaqltkvwtqiannfkkygdhlifetmneprpvgaslqwtggsyenrevvnrynltavna
iratggnnatryimvptlaasamsttindlvipnndskvivslhmyspyffamdingtss
wgsdydkssldsefdavynkfvkngravvigemgsinknntaarvthaeyyaksakargl
tpiwwdngysvagkaetfgifnrsnltwdapevmkafikgiggss

    Sequence, based on observed residues (ATOM records): (download) 
    >3ndyC (C:)
tgvrdvpaqqivnemkvgwnlgntmdaiggetnwgnpmtthaminkikeagfntlrlpvt
wdghmgaapeytidqtwmkrveeianyafdndmyviinlhhenewlkpfyaneaqvkaql
tkvwtqiannfkkygdhlifetmneprpvgaslqwtggsyenrevvnrynltavnairat
ggnnatryimvptlaasamsttindlvipnndskvivslhmyspyffamdingtsswgsd
ydkssldsefdavynkfvkngravvigemgsinknntaarvthaeyyaksakargltpiw
wdngysvagkaetfgifnrsnltwdapevmkafikgiggss

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3ndyD (D:)
staftgvrdvpaqqivnemkvgwnlgntmdaiggetnwgnpmtthaminkikeagfntlr
lpvtwdghmgaapeytidqtwmkrveeianyafdndmyviinlhhenewlkpfyaneaqv
kaqltkvwtqiannfkkygdhlifetmneprpvgaslqwtggsyenrevvnrynltavna
iratggnnatryimvptlaasamsttindlvipnndskvivslhmyspyffamdingtss
wgsdydkssldsefdavynkfvkngravvigemgsinknntaarvthaeyyaksakargl
tpiwwdngysvagkaetfgifnrsnltwdapevmkafikgiggss

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.