PDB entry 3ndo

View 3ndo on RCSB PDB site
Description: Crystal structure of deoxyribose phosphate aldolase from mycobacterium smegmatis
Class: lyase
Keywords: SSGCID, NIH, NIAID, SBRI, UW, EMERALD BIOSTRUCTURES, ALS COLLABORATIVE CRYSTALLOGRAPHY, DEOXYRIBOSEPHOSPHATE ALDOLASE, MYCOBACTERIUM SMEGMATIS, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, LYASE
Deposited on 2010-06-07, released 2010-07-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 1.25 Å
R-factor: N/A
AEROSPACI score: 0.62 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: deoxyribose-phosphate aldolase
    Species: Mycobacterium smegmatis [TaxId:1772]
    Gene: deoC, MSMEG_0922
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ndoa_
  • Chain 'B':
    Compound: deoxyribose-phosphate aldolase
    Species: Mycobacterium smegmatis [TaxId:1772]
    Gene: deoC, MSMEG_0922
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ndob_
  • Heterogens: NH4, UNL, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ndoA (A:)
gpgsmtdhtraqvaalvdhtllkpeatpsdvtalvdeaadlgvfavcvspplvsvaagva
psglaiaavagfpsgkhvpgikateaelavaagateidmvidvgaalagdldavsadita
vrkavraatlkvivesaallefsgeplladvcrvardagadfvktstgfhpsggasvqav
eimartvgerlgvkasggirtaeqaaamldagatrlglsgsravldgfgsa

    Sequence, based on observed residues (ATOM records): (download) 
    >3ndoA (A:)
dhtraqvaalvdhtllkpeatpsdvtalvdeaadlgvfavcvspplvsvaagvapsglai
aavagfpsgkhvpgikateaelavaagateidmvidvgaalagdldavsaditavrkavr
aatlkvivesaallefsgeplladvcrvardagadfvktstgfhpsggasvqaveimart
vgerlgvkasggirtaeqaaamldagatrlglsgsravldgfgsa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ndoB (B:)
gpgsmtdhtraqvaalvdhtllkpeatpsdvtalvdeaadlgvfavcvspplvsvaagva
psglaiaavagfpsgkhvpgikateaelavaagateidmvidvgaalagdldavsadita
vrkavraatlkvivesaallefsgeplladvcrvardagadfvktstgfhpsggasvqav
eimartvgerlgvkasggirtaeqaaamldagatrlglsgsravldgfgsa

    Sequence, based on observed residues (ATOM records): (download) 
    >3ndoB (B:)
dhtraqvaalvdhtllkpeatpsdvtalvdeaadlgvfavcvspplvsvaagvapsglai
aavagfpsgkhvpgikateaelavaagateidmvidvgaalagdldavsaditavrkavr
aatlkvivesaallefsgeplladvcrvardagadfvktstgfhpsggasvqaveimart
vgerlgvkasggirtaeqaaamldagatrlglsgsravldgfgsa