PDB entry 3n3k
View 3n3k on RCSB PDB site
Description: The catalytic domain of USP8 in complex with a USP8 specific inhibitor
Class: hydrolase
Keywords: HYDROLASE, PROTEASE, THIOL PROTEASE, UBL CONJUGATION PATHWAY, DEUBIQUITINATING ENZYME, DUB, ZINC RIBBON, INHIBITOR, UBIQUITIN, Isopeptide bond, Nucleus, Phosphoprotein, Structural Genomics, Structural Genomics Consortium, SGC
Deposited on
2010-05-20, released
2010-06-23
The last revision prior to the SCOPe 2.05 freeze date was dated
2013-02-27, with a file datestamp of
2013-02-22.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.181
AEROSPACI score: 0.33
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ubiquitin carboxyl-terminal hydrolase 8
Species: Homo sapiens [TaxId:9606]
Gene: KIAA0055, UBPY, USP8
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3n3ka_ - Chain 'B':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Gene: RPS27A, UBA52, UBA80, UBB, UBC, UBCEP1, UBCEP2, UBQ
Database cross-references and differences (RAF-indexed):
- Uniprot P62988 (3-End)
- engineered mutant (4)
- engineered mutant (6)
- engineered mutant (11)
- engineered mutant (13)
- engineered mutant (16)
- engineered mutant (64-66)
- engineered mutant (68)
- engineered mutant (70)
- engineered mutant (72)
- engineered mutant (74)
Domains in SCOPe 2.05: d3n3kb_ - Heterogens: ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3n3kA (A:)
mgsshhhhhhssglvprgsptvtptvnrenkptcypkaeisrlsasqirnlnpvfggsgp
altglrnlgntcymnsilqclcnaphladyfnrncyqddinrsnllghkgevaeefgiim
kalwtgqyryispkdfkitigkindqfagysqqdsqelllflmdglhedlnkadnrkryk
eenndhlddfkaaehawqkhkqlnesiivalfqgqfkstvqcltchkksrtfeafmylsl
plastskctlqdclrlfskeekltdnnrfycshcrarrdslkkieiwklppvllvhlkrf
sydgrwkqklqtsvdfplenldlsqyvigpknnlkkynlfsvsnhyggldgghytayckn
aarqrwfkfddhevsdisvssvkssaayilfytslg
Sequence, based on observed residues (ATOM records): (download)
>3n3kA (A:)
rlsasqirnlnpvfggsgpaltglrnlgntcymnsilqclcnaphladyfnrncyqddin
rsnllghkgevaeefgiimkalwtgqyryispkdfkitigkindqfagysqqdsqelllf
lmdglhedlnkadnrkrykeenndhlddfkaaehawqkhkqlnesiivalfqgqfkstvq
cltchkksrtfeafmylslplastskctlqdclrlfskeekltdnnrfycshcrarrdsl
kkieiwklppvllvhlkrfsydgrwkqklqtsvdfplenldlsqyvigpknnlkkynlfs
vsnhyggldgghytaycknaarqrwfkfddhevsdisvssvkssaayilfytslg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3n3kB (B:)
gshmrivvktlmgrtiilevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
dynihnhsalylllklrggggggsg
Sequence, based on observed residues (ATOM records): (download)
>3n3kB (B:)
mrivvktlmgrtiilevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
ihnhsalylllklr