PDB entry 3mpd
View 3mpd on RCSB PDB site
Description: Crystal structure of nucleoside diphosphate kinase from encephalitozoon cuniculi, cubic form, apo
Class: transferase
Keywords: SSGCID, NIH, NIAID, SBRI, UW, EMERALD BIOSTRUCTURES, ENCEPHALITOZOON CUNICULI, KINASE, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, TRANSFERASE
Deposited on
2010-04-26, released
2010-05-12
The last revision prior to the SCOPe 2.08 freeze date was dated
2010-05-12, with a file datestamp of
2010-05-07.
Experiment type: XRAY
Resolution: 2.08 Å
R-factor: 0.177
AEROSPACI score: 0.43
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Encephalitozoon cuniculi [TaxId:6035]
Gene: ECU06_1530, HM-1:IMSS, NDK1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mpda_ - Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Encephalitozoon cuniculi [TaxId:6035]
Gene: ECU06_1530, HM-1:IMSS, NDK1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mpdb_ - Heterogens: EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3mpdA (A:)
gpgsmertfimikpdaikrrlisriiqrfeekglylaaskcvipkrevlethyshlssmp
ffsemvedmmsgmvlamvwvgkdavsigrkligetnpqaasvgtirgdygvstgkniihg
sdcvenaekeiklwigddvqpvsffdkewiy
Sequence, based on observed residues (ATOM records): (download)
>3mpdA (A:)
mertfimikpdaikrrlisriiqrfeekglylaaskcvipkrevlethyshlssmpffse
mvedmmsgmvlamvwvgkdavsigrkligetnpqaasvgtirgdygvstgkniihgsdcv
enaekeiklwigddvqpvsffdkewiy
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3mpdB (B:)
gpgsmertfimikpdaikrrlisriiqrfeekglylaaskcvipkrevlethyshlssmp
ffsemvedmmsgmvlamvwvgkdavsigrkligetnpqaasvgtirgdygvstgkniihg
sdcvenaekeiklwigddvqpvsffdkewiy
Sequence, based on observed residues (ATOM records): (download)
>3mpdB (B:)
mertfimikpdaikrrlisriiqrfeekglylaaskcvipkrevlethyshlssmpffse
mvedmmsgmvlamvwvgkdavsigrkligetnpqaasvgtirgdygvstgkniihgsdcv
enaekeiklwigddvqpvsffdkewiy