PDB entry 3mhs

View 3mhs on RCSB PDB site
Description: Structure of the SAGA Ubp8/Sgf11/Sus1/Sgf73 DUB module bound to ubiquitin aldehyde
Class: Hydrolase/transcription regulator/protein binding
Keywords: Multi-protein complex, Hydrolase-transcription regulator-protein binding complex, Acetylation, Cytoplasm, Isopeptide bond, Nucleus, Phosphoprotein, Ubl conjugation
Deposited on 2010-04-08, released 2010-04-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-06-09, with a file datestamp of 2010-06-04.
Experiment type: XRAY
Resolution: 1.89 Å
R-factor: 0.161
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin carboxyl-terminal hydrolase 8
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: UBP8, YMR223W, YM9959.05
    Database cross-references and differences (RAF-indexed):
    • Uniprot P50102 (5-475)
      • expression tag (4)
  • Chain 'B':
    Compound: Protein SUS1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SUS1, YBR111W-A
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3mhsb_
  • Chain 'C':
    Compound: SAGA-associated factor 11
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SGF11, YPL047W
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3mhsd_
  • Chain 'E':
    Compound: SAGA-associated factor 73
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: SGF73, YGL066W
    Database cross-references and differences (RAF-indexed):
  • Heterogens: EDO, GOL, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3mhsB (B:)
    mtmdtaqlksqiqqylvesgnyelisnelkarllqegwvdkvkdltksemninestnftq
    ilstvepkalemvsdstretvlkqirefleeivdtq
    

    Sequence, based on observed residues (ATOM records): (download)
    >3mhsB (B:)
    taqlksqiqqylvesgnyelisnelkarllqegwvdkvkdltksemninestnftqilst
    vepkalemvsdstretvlkqirefleeivdt
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3mhsD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'E':
    No sequence available.