PDB entry 3mgo
View 3mgo on RCSB PDB site
Description: Crystal structure of a H5-specific CTL epitope derived from H5N1 influenza virus in complex with HLA-A*0201
Class: Immune System
Keywords: beta strands-alpha helix, Ig-like domain, Immune System
Deposited on
2010-04-07, released
2010-05-19
The last revision prior to the SCOPe 2.01 freeze date was dated
2010-05-26, with a file datestamp of
2010-05-21.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.204
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A*0201 heavy chain
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: beta2 microglobin
Database cross-references and differences (RAF-indexed):
- Uniprot P61769 (1-99)
- initiating methionine (0)
Domains in SCOPe 2.01: d3mgob_ - Chain 'C':
Compound: 10-meric peptide from Hemagglutinin
Species: Influenza A virus, synthetic [TaxId:102793]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A*0201 heavy chain
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: beta2 microglobin
Database cross-references and differences (RAF-indexed):
- Uniprot P61769 (1-99)
- initiating methionine (0)
Domains in SCOPe 2.01: d3mgoe_ - Chain 'F':
Compound: 10-meric peptide from Hemagglutinin
Species: Influenza A virus, synthetic [TaxId:102793]
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A*0201 heavy chain
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: beta2 microglobin
Database cross-references and differences (RAF-indexed):
- Uniprot P61769 (1-99)
- initiating methionine (0)
Domains in SCOPe 2.01: d3mgoh_ - Chain 'I':
Compound: 10-meric peptide from Hemagglutinin
Species: Influenza A virus, synthetic [TaxId:102793]
Database cross-references and differences (RAF-indexed):
- Chain 'J':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A*0201 heavy chain
Database cross-references and differences (RAF-indexed):
- Chain 'K':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: beta2 microglobin
Database cross-references and differences (RAF-indexed):
- Uniprot P61769 (1-99)
- initiating methionine (0)
Domains in SCOPe 2.01: d3mgok_ - Chain 'L':
Compound: 10-meric peptide from Hemagglutinin
Species: Influenza A virus, synthetic [TaxId:102793]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3mgoB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>3mgoE (E:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>3mgoH (H:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.
- Chain 'K':
Sequence; same for both SEQRES and ATOM records: (download)
>3mgoK (K:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'L':
No sequence available.