PDB entry 3mdc

View 3mdc on RCSB PDB site
Description: DNA polymerase lambda in complex with dFdCTP
Class: Lyase,Transferase/DNA
Keywords: protein-DNA complex, Lyase, Transferase-DNA complex
Deposited on 2010-03-30, released 2010-04-28
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase lambda
    Species: Homo sapiens [TaxId:9606]
    Gene: POLL
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3mdca1, d3mdca2, d3mdca3
  • Chain 'D':
    Compound: DNA (5'-d(p*gp*cp*cp*g)-3')
  • Chain 'P':
    Compound: DNA (5'-d(*cp*ap*gp*tp*ap*c)-3')
  • Chain 'T':
    Compound: DNA (5'-d(*cp*gp*gp*cp*gp*gp*tp*ap*cp*tp*g)-3')
  • Heterogens: GTF, NA, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3mdcA (A:)
    ahnlhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkrma
    ekiieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqaslt
    tqqaiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvdv
    lithpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrld
    iivvpysefacallyftgsahfnrsmralaktkgmslsehalstavvrnthgckvgpgrv
    lptptekdvfrllglpyrepaerdw
    

    Sequence, based on observed residues (ATOM records): (download)
    >3mdcA (A:)
    lhiteklevlakaysvqgdkwralgyakainalksfhkpvtsyqeacsipgigkrmaeki
    ieilesghlrkldhisesvpvlelfsniwgagtktaqmwyqqgfrsledirsqaslttqq
    aiglkhysdflermpreeateieqtvqkaaqafnsgllcvacgsyrrgkatcgdvdvlit
    hpdgrshrgifsrlldslrqegfltddlvsqeengqqqkylgvcrlpgpgrrhrrldiiv
    vpysefacallyftgsahfnrsmralaktkgmslsehalstagpgrvlptptekdvfrll
    glpyrepaerdw
    

  • Chain 'D':
    No sequence available.

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.