PDB entry 3lhd

View 3lhd on RCSB PDB site
Description: Crystal structure of P. abyssi tRNA m1A58 methyltransferase in complex with S-adenosyl-L-homocysteine
Class: transferase
Keywords: RNA methyltransferase, m1A, TrmI, intermolecular contacts, region-specificity, tetramer, disulfide bond, hyperthermostability, Methyltransferase, Transferase
Deposited on 2010-01-22, released 2010-05-19
The last revision prior to the SCOPe 2.04 freeze date was dated 2010-10-27, with a file datestamp of 2010-10-22.
Experiment type: XRAY
Resolution: 2.59 Å
R-factor: 0.233
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SAM-dependent methyltransferase, putative
    Species: Pyrococcus abyssi [TaxId:272844]
    Gene: PAB0283
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3lhda_
  • Chain 'B':
    Compound: SAM-dependent methyltransferase, putative
    Species: Pyrococcus abyssi [TaxId:272844]
    Gene: PAB0283
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3lhdb_
  • Chain 'C':
    Compound: SAM-dependent methyltransferase, putative
    Species: Pyrococcus abyssi [TaxId:272844]
    Gene: PAB0283
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3lhdc_
  • Chain 'D':
    Compound: SAM-dependent methyltransferase, putative
    Species: Pyrococcus abyssi [TaxId:272844]
    Gene: PAB0283
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3lhdd_
  • Heterogens: SAH, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3lhdA (A:)
miregdkvvlvdprgkrylitvskrdfhtdlgilkleeiigrnfgeaikshkghefkilr
privdyldkmkrgpqivhpkdaalivayagispgdfiveagvgsgaltlflanivgpegr
vvsyeiredfaklawenikwagfddrvtiklkdiyegieeenvdhvildlpqpervveha
akalkpggffvaytpcsnqvmrlheklrefkdyfmkprtinvlvfdqevkkecmrprtta
lvhtgyitfarri

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3lhdB (B:)
miregdkvvlvdprgkrylitvskrdfhtdlgilkleeiigrnfgeaikshkghefkilr
privdyldkmkrgpqivhpkdaalivayagispgdfiveagvgsgaltlflanivgpegr
vvsyeiredfaklawenikwagfddrvtiklkdiyegieeenvdhvildlpqpervveha
akalkpggffvaytpcsnqvmrlheklrefkdyfmkprtinvlvfdqevkkecmrprtta
lvhtgyitfarri

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3lhdC (C:)
miregdkvvlvdprgkrylitvskrdfhtdlgilkleeiigrnfgeaikshkghefkilr
privdyldkmkrgpqivhpkdaalivayagispgdfiveagvgsgaltlflanivgpegr
vvsyeiredfaklawenikwagfddrvtiklkdiyegieeenvdhvildlpqpervveha
akalkpggffvaytpcsnqvmrlheklrefkdyfmkprtinvlvfdqevkkecmrprtta
lvhtgyitfarri

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3lhdD (D:)
miregdkvvlvdprgkrylitvskrdfhtdlgilkleeiigrnfgeaikshkghefkilr
privdyldkmkrgpqivhpkdaalivayagispgdfiveagvgsgaltlflanivgpegr
vvsyeiredfaklawenikwagfddrvtiklkdiyegieeenvdhvildlpqpervveha
akalkpggffvaytpcsnqvmrlheklrefkdyfmkprtinvlvfdqevkkecmrprtta
lvhtgyitfarri