PDB entry 3lga

View 3lga on RCSB PDB site
Description: Crystal structure of P. abyssi tRNA m1A58 methyltransferase in complex with S-adenosyl-L-homocysteine
Class: transferase
Keywords: RNA methyltransferase, m1A, TrmI, intermolecular contacts, region-specificity, tetramer, disulfide bond, hyperthermostability, Methyltransferase, Transferase
Deposited on 2010-01-20, released 2010-06-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-10-27, with a file datestamp of 2010-10-22.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.2
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SAM-dependent methyltransferase
    Species: Pyrococcus abyssi [TaxId:272844]
    Gene: PAB0283
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3lgaa_
  • Chain 'B':
    Compound: SAM-dependent methyltransferase
    Species: Pyrococcus abyssi [TaxId:272844]
    Gene: PAB0283
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3lgab_
  • Chain 'C':
    Compound: SAM-dependent methyltransferase
    Species: Pyrococcus abyssi [TaxId:272844]
    Gene: PAB0283
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3lgac_
  • Chain 'D':
    Compound: SAM-dependent methyltransferase
    Species: Pyrococcus abyssi [TaxId:272844]
    Gene: PAB0283
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3lgad_
  • Heterogens: SAH, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3lgaA (A:)
miregdkvvlvdprgkrylitvskrdfhtdlgilkleeiigrnfgeaikshkghefkilr
privdyldkmkrgpqivhpkdaalivayagispgdfiveagvgsgaltlflanivgpegr
vvsyeiredfaklawenikwagfddrvtiklkdiyegieeenvdhvildlpqpervveha
akalkpggffvaytpcsnqvmrlheklrefkdyfmkprtinvlvfdqevkkecmrprtta
lvhtgyitfarri

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3lgaB (B:)
miregdkvvlvdprgkrylitvskrdfhtdlgilkleeiigrnfgeaikshkghefkilr
privdyldkmkrgpqivhpkdaalivayagispgdfiveagvgsgaltlflanivgpegr
vvsyeiredfaklawenikwagfddrvtiklkdiyegieeenvdhvildlpqpervveha
akalkpggffvaytpcsnqvmrlheklrefkdyfmkprtinvlvfdqevkkecmrprtta
lvhtgyitfarri

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3lgaC (C:)
miregdkvvlvdprgkrylitvskrdfhtdlgilkleeiigrnfgeaikshkghefkilr
privdyldkmkrgpqivhpkdaalivayagispgdfiveagvgsgaltlflanivgpegr
vvsyeiredfaklawenikwagfddrvtiklkdiyegieeenvdhvildlpqpervveha
akalkpggffvaytpcsnqvmrlheklrefkdyfmkprtinvlvfdqevkkecmrprtta
lvhtgyitfarri

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3lgaD (D:)
miregdkvvlvdprgkrylitvskrdfhtdlgilkleeiigrnfgeaikshkghefkilr
privdyldkmkrgpqivhpkdaalivayagispgdfiveagvgsgaltlflanivgpegr
vvsyeiredfaklawenikwagfddrvtiklkdiyegieeenvdhvildlpqpervveha
akalkpggffvaytpcsnqvmrlheklrefkdyfmkprtinvlvfdqevkkecmrprtta
lvhtgyitfarri