PDB entry 3ld9

View 3ld9 on RCSB PDB site
Description: Crystal structure of thymidylate kinase from Ehrlichia chaffeensis at 2.15A resolution
Class: transferase
Keywords: SSGCID, NIH, NIAID, SBRI, UW, Emerald Biostructures, Ehrlichia chaffeensis, thymidylate kinase, ALS collaborative crystallography, ATP-binding, Kinase, Nucleotide biosynthesis, Nucleotide-binding, Transferase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease
Deposited on 2010-01-12, released 2010-02-16
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-09-21, with a file datestamp of 2011-09-16.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.189
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: thymidylate kinase
    Species: Ehrlichia chaffeensis [TaxId:205920]
    Gene: tmk, ECH_0229
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2GHN3 (21-End)
      • expression tag (18-20)
    Domains in SCOPe 2.06: d3ld9a1, d3ld9a2
  • Chain 'B':
    Compound: thymidylate kinase
    Species: Ehrlichia chaffeensis [TaxId:205920]
    Gene: tmk, ECH_0229
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2GHN3 (21-End)
      • expression tag (18-20)
    Domains in SCOPe 2.06: d3ld9b1, d3ld9b2
  • Chain 'C':
    Compound: thymidylate kinase
    Species: Ehrlichia chaffeensis [TaxId:205920]
    Gene: tmk, ECH_0229
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2GHN3 (21-End)
      • expression tag (18-20)
    Domains in SCOPe 2.06: d3ld9c1, d3ld9c2
  • Chain 'D':
    Compound: thymidylate kinase
    Species: Ehrlichia chaffeensis [TaxId:205920]
    Gene: tmk, ECH_0229
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2GHN3 (21-End)
      • expression tag (18-20)
    Domains in SCOPe 2.06: d3ld9d1, d3ld9d2
  • Heterogens: SO4, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ld9A (A:)
    mahhhhhhmgtleaqtqgpgsmfitfegidgsgkttqshllaeylseiygvnnvvltrep
    ggtllnesvrnllfkaqgldslsellffiamrrehfvkiikpslmqkkivicdrfidsti
    ayqgygqgidcslidqlndlvidvypditfiidvdineslsrsckngyefadmefyyrvr
    dgfydiakknphrchvitdksetydiddinfvhlevikvlqmv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ld9A (A:)
    pgsmfitfegidgsgkttqshllaeylseiygvnnvvltrepggtllnesvrnllfkaqg
    ldslsellffiamrrehfvkiikpslmqkkivicdrfidstiayqgygqgidcslidqln
    dlvidvypditfiidvddmefyyrvrdgfydiakknphrchvitdksetydiddinfvhl
    evikvlq
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ld9B (B:)
    mahhhhhhmgtleaqtqgpgsmfitfegidgsgkttqshllaeylseiygvnnvvltrep
    ggtllnesvrnllfkaqgldslsellffiamrrehfvkiikpslmqkkivicdrfidsti
    ayqgygqgidcslidqlndlvidvypditfiidvdineslsrsckngyefadmefyyrvr
    dgfydiakknphrchvitdksetydiddinfvhlevikvlqmv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ld9B (B:)
    pgsmfitfegidgsgkttqshllaeylseiygvnnvvltrepggtllnesvrnllfkaqg
    ldslsellffiamrrehfvkiikpslmqkkivicdrfidstiayqgygqgidcslidqln
    dlvidvypditfiidvdmefyyrvrdgfydiakknphrchvitdinfvhlevikvlqm
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3ld9C (C:)
    mahhhhhhmgtleaqtqgpgsmfitfegidgsgkttqshllaeylseiygvnnvvltrep
    ggtllnesvrnllfkaqgldslsellffiamrrehfvkiikpslmqkkivicdrfidsti
    ayqgygqgidcslidqlndlvidvypditfiidvdineslsrsckngyefadmefyyrvr
    dgfydiakknphrchvitdksetydiddinfvhlevikvlqmv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ld9C (C:)
    pgsmfitfegidgsgkttqshllaeylseiygvnnvvltrepggtllnesvrnllfkaqg
    ldslsellffiamrrehfvkiikpslmqkkivicdrfidstiayqgygqgidcslidqln
    dlvidvypditfiidvddmefyyrvrdgfydiakknphrchvitfvhlevikvlq
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3ld9D (D:)
    mahhhhhhmgtleaqtqgpgsmfitfegidgsgkttqshllaeylseiygvnnvvltrep
    ggtllnesvrnllfkaqgldslsellffiamrrehfvkiikpslmqkkivicdrfidsti
    ayqgygqgidcslidqlndlvidvypditfiidvdineslsrsckngyefadmefyyrvr
    dgfydiakknphrchvitdksetydiddinfvhlevikvlqmv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ld9D (D:)
    pgsmfitfegidgsgkttqshllaeylseiygvnnvvltrepggtllnesvrnllfkaqg
    ldslsellffiamrrehfvkiikpslmqkkivicdrfidstiayqgygqgidcslidqln
    dlvidvypditfiidvddmefyyrvrdgfydiakknphrchvittydiddinfvhlevik
    vlqm