PDB entry 3ld9
View 3ld9 on RCSB PDB site
Description: Crystal structure of thymidylate kinase from Ehrlichia chaffeensis at 2.15A resolution
Class: transferase
Keywords: SSGCID, NIH, NIAID, SBRI, UW, Emerald Biostructures, Ehrlichia chaffeensis, thymidylate kinase, ALS collaborative crystallography, ATP-binding, Kinase, Nucleotide biosynthesis, Nucleotide-binding, Transferase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease
Deposited on
2010-01-12, released
2010-02-16
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-09-21, with a file datestamp of
2011-09-16.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.189
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: thymidylate kinase
Species: Ehrlichia chaffeensis [TaxId:205920]
Gene: tmk, ECH_0229
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3ld9a1, d3ld9a2 - Chain 'B':
Compound: thymidylate kinase
Species: Ehrlichia chaffeensis [TaxId:205920]
Gene: tmk, ECH_0229
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3ld9b1, d3ld9b2 - Chain 'C':
Compound: thymidylate kinase
Species: Ehrlichia chaffeensis [TaxId:205920]
Gene: tmk, ECH_0229
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3ld9c1, d3ld9c2 - Chain 'D':
Compound: thymidylate kinase
Species: Ehrlichia chaffeensis [TaxId:205920]
Gene: tmk, ECH_0229
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3ld9d1, d3ld9d2 - Heterogens: SO4, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3ld9A (A:)
mahhhhhhmgtleaqtqgpgsmfitfegidgsgkttqshllaeylseiygvnnvvltrep
ggtllnesvrnllfkaqgldslsellffiamrrehfvkiikpslmqkkivicdrfidsti
ayqgygqgidcslidqlndlvidvypditfiidvdineslsrsckngyefadmefyyrvr
dgfydiakknphrchvitdksetydiddinfvhlevikvlqmv
Sequence, based on observed residues (ATOM records): (download)
>3ld9A (A:)
pgsmfitfegidgsgkttqshllaeylseiygvnnvvltrepggtllnesvrnllfkaqg
ldslsellffiamrrehfvkiikpslmqkkivicdrfidstiayqgygqgidcslidqln
dlvidvypditfiidvddmefyyrvrdgfydiakknphrchvitdksetydiddinfvhl
evikvlq
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3ld9B (B:)
mahhhhhhmgtleaqtqgpgsmfitfegidgsgkttqshllaeylseiygvnnvvltrep
ggtllnesvrnllfkaqgldslsellffiamrrehfvkiikpslmqkkivicdrfidsti
ayqgygqgidcslidqlndlvidvypditfiidvdineslsrsckngyefadmefyyrvr
dgfydiakknphrchvitdksetydiddinfvhlevikvlqmv
Sequence, based on observed residues (ATOM records): (download)
>3ld9B (B:)
pgsmfitfegidgsgkttqshllaeylseiygvnnvvltrepggtllnesvrnllfkaqg
ldslsellffiamrrehfvkiikpslmqkkivicdrfidstiayqgygqgidcslidqln
dlvidvypditfiidvdmefyyrvrdgfydiakknphrchvitdinfvhlevikvlqm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3ld9C (C:)
mahhhhhhmgtleaqtqgpgsmfitfegidgsgkttqshllaeylseiygvnnvvltrep
ggtllnesvrnllfkaqgldslsellffiamrrehfvkiikpslmqkkivicdrfidsti
ayqgygqgidcslidqlndlvidvypditfiidvdineslsrsckngyefadmefyyrvr
dgfydiakknphrchvitdksetydiddinfvhlevikvlqmv
Sequence, based on observed residues (ATOM records): (download)
>3ld9C (C:)
pgsmfitfegidgsgkttqshllaeylseiygvnnvvltrepggtllnesvrnllfkaqg
ldslsellffiamrrehfvkiikpslmqkkivicdrfidstiayqgygqgidcslidqln
dlvidvypditfiidvddmefyyrvrdgfydiakknphrchvitfvhlevikvlq
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3ld9D (D:)
mahhhhhhmgtleaqtqgpgsmfitfegidgsgkttqshllaeylseiygvnnvvltrep
ggtllnesvrnllfkaqgldslsellffiamrrehfvkiikpslmqkkivicdrfidsti
ayqgygqgidcslidqlndlvidvypditfiidvdineslsrsckngyefadmefyyrvr
dgfydiakknphrchvitdksetydiddinfvhlevikvlqmv
Sequence, based on observed residues (ATOM records): (download)
>3ld9D (D:)
pgsmfitfegidgsgkttqshllaeylseiygvnnvvltrepggtllnesvrnllfkaqg
ldslsellffiamrrehfvkiikpslmqkkivicdrfidstiayqgygqgidcslidqln
dlvidvypditfiidvddmefyyrvrdgfydiakknphrchvittydiddinfvhlevik
vlqm