PDB entry 3l8c

View 3l8c on RCSB PDB site
Description: Structure of probable D-alanine--poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes
Class: ligase
Keywords: structural genomics, D-alanine-poly(phosphoribitol) ligase, dltA, ATP-binding, Cytoplasm, Ligase, Nucleotide-binding, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC
Deposited on 2009-12-30, released 2010-01-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-alanine--poly(phosphoribitol) ligase subunit 1
    Species: Streptococcus pyogenes serotype M6 [TaxId:301450]
    Gene: dltA, M6_Spy1043
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5XBN5 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3l8ca1, d3l8ca2
  • Chain 'B':
    Compound: D-alanine--poly(phosphoribitol) ligase subunit 1
    Species: Streptococcus pyogenes serotype M6 [TaxId:301450]
    Gene: dltA, M6_Spy1043
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5XBN5 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3l8cb1, d3l8cb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3l8cA (A:)
    mslkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvf
    gaqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegisl
    vslseiesaklaempyerthsvkgddnyyiiftsgttgqpkgvqishdnllsftnwmied
    aafdvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvg
    iwtstpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpt
    eatvalsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavsk
    gylnnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsq
    qlnqspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmms
    ymmpskflyrdslpltpngkidiktlinevnnreghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3l8cA (A:)
    slkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvfg
    aqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegislv
    slseiesaklaempyerthsvkgddnyyiiftsgqpkgvqishdnllsftnwmiedaafd
    vpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvgiwts
    tpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpteatv
    alsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavskgyln
    npektaeafftfkgqpayhtgdigsltednillyggrldfqikieledvsqqlnqspmva
    savavprynkehkllayivvkdgvkerfdreleltkaikasvkdhmmsymmpskflyrds
    lpltpngkidiktlinevn
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3l8cB (B:)
    mslkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvf
    gaqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegisl
    vslseiesaklaempyerthsvkgddnyyiiftsgttgqpkgvqishdnllsftnwmied
    aafdvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvg
    iwtstpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpt
    eatvalsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavsk
    gylnnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsq
    qlnqspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmms
    ymmpskflyrdslpltpngkidiktlinevnnreghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3l8cB (B:)
    slkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvfg
    aqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegislv
    slseiesaklaempyerthsvkgddnyyiiftsgttgqpkgvqishdnllsftnwmieda
    afdvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvgi
    wtstpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpte
    atvalsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavskg
    ylnnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsqq
    lnqspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmmsy
    mmpskflyrdslpltpngkidiktlinevn