PDB entry 3l71

View 3l71 on RCSB PDB site
Description: Cytochrome BC1 complex from chicken with azoxystrobin bound
Class: oxidoreductase
Keywords: CYTOCHROME BC1, MEMBRANE PROTEIN, HEME PROTEIN, RIESKE IRON SULFUR PROTEIN, CYTOCHROME B, CYTOCHROME C1, COMPLEX III, MITOCHONDRIAL PROCESSING PROTEIN, UBIQUINONE, AZOXYSTROBIN OXIDOREDUCTASE, REDOX ENZYME RESPIRATORY CHAIN, ELECTRON TRANSPORT, HEME, INNER MEMBRANE, MEMBRANE, STROBILURINS BINDING, MITOCHONDRION, TRANSMEMBRANE, STIGMATELLIN, IRON, MITOCHONDRIAL INNER MEMBRANE, RESPIRATORY CHAIN, 2FE-2S, IRON-SULFUR, TRANSIT PEPTIDE, Metal-binding, Mitochondrion inner membrane, Transport, Disulfide bond
Deposited on 2009-12-27, released 2010-02-02
The last revision prior to the SCOPe 2.03 freeze date was dated 2010-02-02, with a file datestamp of 2010-01-29.
Experiment type: XRAY
Resolution: 2.84 Å
R-factor: 0.247
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71a1, d3l71a2
  • Chain 'B':
    Compound: Mitochondrial ubiquinol-cytochrome-c reductase complex core protein 2
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71b1, d3l71b2
  • Chain 'C':
    Compound: cytochrome b
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71c1, d3l71c2
  • Chain 'D':
    Compound: Mitochondrial cytochrome c1, heme protein
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71d1
  • Chain 'E':
    Compound: Cytochrome b-c1 complex subunit Rieske, mitochondrial
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71f_
  • Chain 'G':
    Compound: Mitochondrial ubiquinol-cytochrome c reductase ubiquinone-binding protein qp-c
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71g_
  • Chain 'H':
    Compound: Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71h_
  • Chain 'I':
    Compound: Cytochrome b-c1 complex subunit Rieske, mitochondrial
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZLR5 (15-End)
      • insertion (0-14)
  • Chain 'J':
    Compound: Mitochondrial ubiquinol-cytochrome c reductase 7.2 kda protein
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71j_
  • Chain 'N':
    Compound: Mitochondrial ubiquinol-cytochrome-c reductase complex core protein i
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71n1, d3l71n2
  • Chain 'O':
    Compound: Mitochondrial ubiquinol-cytochrome-c reductase complex core protein 2
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71o1, d3l71o2
  • Chain 'P':
    Compound: cytochrome b
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71p1, d3l71p2
  • Chain 'Q':
    Compound: Mitochondrial cytochrome c1, heme protein
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: Cytochrome b-c1 complex subunit Rieske, mitochondrial
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: Mitochondrial ubiquinol-cytochrome c reductase 14 kda protein
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71s_
  • Chain 'T':
    Compound: Mitochondrial ubiquinol-cytochrome c reductase ubiquinone-binding protein qp-c
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71t_
  • Chain 'U':
    Compound: Mitochondrial ubiquinol-cytochrome c reductase 11 kda protein, complex iii subunit viii
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71u_
  • Chain 'V':
    Compound: Cytochrome b-c1 complex subunit Rieske, mitochondrial
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZLR5 (15-End)
      • insertion (3-8)
      • insertion (9-14)
  • Chain 'W':
    Compound: Mitochondrial ubiquinol-cytochrome c reductase 7.2 kda protein
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3l71w_
  • Heterogens: PEE, HEM, AZO, UQ, GOL, HEC, CDL, BOG, FES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3l71A (A:)
aatyaqtlqnipetnvttldnglrvaseessqptctvgvwigagsryeneknngagyfve
hlafkgtkkrpcaafekevesmgahfngytsreqtafyikalskdmpkvvelladvvqnc
aleesqiekergvilqelkemdndmtnvtfdylhatafqgtalartvegttenikhltra
dlasyidthfkaprmvlaaaggishkelvdaarqhfsgvsftykedavpilprcrftgse
irarddalpvahvalavegpgwadpdnvvlhvanaiigrydrtfgggkhlssrlaalave
hklchsfqtfntsysdtglfgfhfvadplsiddmmfcaqgewmrlctsttesevkraknh
lrsamvaqldgttpvcetigshllnygrrisleewdsrisavdarmvrdvcskyiydkcp
alaavgpieqlldynrirsgmywirf

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71A (A:)
aatyaqtlqnipetnvttldnglrvaseessqptctvgvwigagsryeneknngagyfve
hlafkgtkkrpcaafekevesmgahfngytsreqtafyikalskdmpkvvelladvvqnc
aleesqiekergvilqelkemdndmtnvtfdylhatafqgtalartvegttenikhltra
dlasyidthfkaprmvlaaaggishkelvdaarqhfsgvsftykedavpilprcrftgse
irarddalpvahvalavegpgwadpdnvvlhvanaiigrydrtfgggkhlssrlaalave
hklchsfqtfntsysdtglfgfhfvadplsiddmmfcaqgewmrlctsttesevkraknh
lrsamvaqldgttpvcetigshllnygrrisleewdsrisavdarmvrdvcskyiydkcp
alaavgpieqlldynrirsgmywi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3l71B (B:)
slkvapkvavsaaaervklcpgaedleitklpngliiaslenfspasrigvfikagsrye
ttanlgtahllrlasplttkgassfritrgieavggslsvystrekmtycveclrdhvdt
vmeyllnvttapefrpwevtdlqpqlkvdkavafqspqvgvlenlhaaayktalanplyc
pdyrigkitseqlhhfvqnnftsarmalvgigvkhsdlkqvaeqflnirsgagtssakat
ywggeireqnghslvhaavvtegaavgsaeanafsvlqhvlgagplikrgssvtsklyqg
vakattqpfdasafnvnysdsglfgfytisqaahageviraamnqlkaaaqggvteedvt
kaknqlkatylmsvetaqgllneigseallsgthtapsvvaqkidsvtsadvvnaakkfv
sgkksmaasgdlgstpfldel

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71B (B:)
gaedleitklpngliiaslenfspasrigvfikagsryettanlgtahllrlasplttkg
assfritrgieavggslsvystrekmtycveclrdhvdtvmeyllnvttapefrpwevtd
lqpqlkvdkavafqspqvgvlenlhaaayktalanplycpdyrigkitseqlhhfvqnnf
tsarmalvgigvkhsdlkqvaeqflnirsgagtssakatywggeireqnghslvhaavvt
egaavgsaeanafsvlqhvlgagplikrgssvtsklyqgvakattqpfdasafnvnysds
glfgfytisqaahageviraamnqlkaaaqggvteedvtkaknqlkatylmsvetaqgll
neigseallsgthtapsvvaqkidsvtsadvvnaakkfvsgkksmaasgdlgstpfldel

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3l71C (C:)
mapnirkshpllkminnslidlpapsnisawwnfgsllavclmtqiltglllamhytadt
slafssvahtcrnvqygwlirnlhangasffficiflhigrglyygsylyketwntgvil
lltlmatafvgyvlpwgqmsfwgatvitnlfsaipyightlvewawggfsvdnptltrff
alhfllpfaiagitiihltflhesgsnnplgissdsdkipfhpyysfkdilgltlmltpf
ltlalfspnllgdpenftpanplvtpphikpewyflfayailrsipnklggvlalaasvl
ilflipflhkskqrtmtfrplsqtlfwllvanlliltwigsqpvehpfiiigqmaslsyf
tillilfptigtlenkmlny

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3l71D (D:)
gelelhppafpwshggplsaldhssvrrgfqvykqvcsachsmdyvafrnligvthteae
akalaeevevqdgpdengelfmrpgkisdyfpkpypnpeaaraanngalppdlsyivnar
hggedyvfslltgycdppagvvvreglhynpyfpgqaigmappiyneileyddgtpatms
qiakdvctflrwaaepehdqrkrmglkmllisalltsllyymkrhkwsvlksrkmayrpp
k

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3l71F (F:)
aaratvagggrlmdrirkwyynaagfnkyglmrddtlyedddvkealkrlpedlynermf
rikraldlslkhrilpkeqwvkyeedkpylepylkevirerlereawnkk

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71F (F:)
grlmdrirkwyynaagfnkyglmrddtlyedddvkealkrlpedlynermfrikraldls
lkhrilpkeqwvkyeedkpylepylkevirerlereawnkk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3l71G (G:)
gihfgnlarvrhiityslspfeqraipnifsdalpnvwrrfssqvfkvappflgayllys
wgtqeferlkrknpadyendq

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71G (G:)
ihfgnlarvrhiityslspfeqraipnifsdalpnvwrrfssqvfkvappflgayllysw
gtqeferlkrknpadyendq

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3l71H (H:)
lrgsgeeeeeelvdplttirehceqtekcvkarerlelcdarvssrshteeqcteelfdf
lhardhcvahklfnklk

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71H (H:)
eeeelvdplttirehceqtekcvkarerlelcdarvssrshteeqcteelfdflhardhc
vahklfnklk

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3l71J (J:)
allrqaysalfrrtstfaltvvlgavlferafdqgadaifehlnegklwkhikhkyease
e

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >3l71N (N:)
aatyaqtlqnipetnvttldnglrvaseessqptctvgvwigagsryeneknngagyfve
hlafkgtkkrpcaafekevesmgahfngytsreqtafyikalskdmpkvvelladvvqnc
aleesqiekergvilqelkemdndmtnvtfdylhatafqgtalartvegttenikhltra
dlasyidthfkaprmvlaaaggishkelvdaarqhfsgvsftykedavpilprcrftgse
irarddalpvahvalavegpgwadpdnvvlhvanaiigrydrtfgggkhlssrlaalave
hklchsfqtfntsysdtglfgfhfvadplsiddmmfcaqgewmrlctsttesevkraknh
lrsamvaqldgttpvcetigshllnygrrisleewdsrisavdarmvrdvcskyiydkcp
alaavgpieqlldynrirsgmywirf

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71N (N:)
tyaqtlqnipetnvttldnglrvaseessqptctvgvwigagsryeneknngagyfvehl
afkgtkkrpcaafekevesmgahfngytsreqtafyikalskdmpkvvelladvvqncal
eesqiekergvilqelkemdndmtnvtfdylhatafqgtalartvegttenikhltradl
asyidthfkaprmvlaaaggishkelvdaarqhfsgvsftykedavpilprcrftgseir
arddalpvahvalavegpgwadpdnvvlhvanaiigrydrtfgggkhlssrlaalavehk
lchsfqtfntsysdtglfgfhfvadplsiddmmfcaqgewmrlctsttesevkraknhlr
samvaqldgttpvcetigshllnygrrisleewdsrisavdarmvrdvcskyiydkcpal
aavgpieqlldynrirsgmywi

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >3l71O (O:)
slkvapkvavsaaaervklcpgaedleitklpngliiaslenfspasrigvfikagsrye
ttanlgtahllrlasplttkgassfritrgieavggslsvystrekmtycveclrdhvdt
vmeyllnvttapefrpwevtdlqpqlkvdkavafqspqvgvlenlhaaayktalanplyc
pdyrigkitseqlhhfvqnnftsarmalvgigvkhsdlkqvaeqflnirsgagtssakat
ywggeireqnghslvhaavvtegaavgsaeanafsvlqhvlgagplikrgssvtsklyqg
vakattqpfdasafnvnysdsglfgfytisqaahageviraamnqlkaaaqggvteedvt
kaknqlkatylmsvetaqgllneigseallsgthtapsvvaqkidsvtsadvvnaakkfv
sgkksmaasgdlgstpfldel

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71O (O:)
cpgaedleitklpngliiaslenfspasrigvfikagsryettanlgtahllrlaspltt
kgassfritrgieavggslsvystrekmtycveclrdhvdtvmeyllnvttapefrpwev
tdlqpqlkvdkavafqspqvgvlenlhaaayktalanplycpdyrigkitseqlhhfvqn
nftsarmalvgigvkhsdlkqvaeqflnirsgagtssakatywggeireqnghslvhaav
vtegaavgsaeanafsvlqhvlgagplikrgssvtsklyqgvakattqpfdasafnvnys
dsglfgfytisqaahageviraamnqlkaaaqggvteedvtkaknqlkatylmsvetaqg
llneigseallsgthtapsvvaqkidsvtsadvvnaakkfvsgkksmaasgdlgstpfld
el

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >3l71P (P:)
mapnirkshpllkminnslidlpapsnisawwnfgsllavclmtqiltglllamhytadt
slafssvahtcrnvqygwlirnlhangasffficiflhigrglyygsylyketwntgvil
lltlmatafvgyvlpwgqmsfwgatvitnlfsaipyightlvewawggfsvdnptltrff
alhfllpfaiagitiihltflhesgsnnplgissdsdkipfhpyysfkdilgltlmltpf
ltlalfspnllgdpenftpanplvtpphikpewyflfayailrsipnklggvlalaasvl
ilflipflhkskqrtmtfrplsqtlfwllvanlliltwigsqpvehpfiiigqmaslsyf
tillilfptigtlenkmlny

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71P (P:)
apnirkshpllkminnslidlpapsnisawwnfgsllavclmtqiltglllamhytadts
lafssvahtcrnvqygwlirnlhangasffficiflhigrglyygsylyketwntgvill
ltlmatafvgyvlpwgqmsfwgatvitnlfsaipyightlvewawggfsvdnptltrffa
lhfllpfaiagitiihltflhesgsnnplgissdsdkipfhpyysfkdilgltlmltpfl
tlalfspnllgdpenftpanplvtpphikpewyflfayailrsipnklggvlalaasvli
lflipflhkskqrtmtfrplsqtlfwllvanlliltwigsqpvehpfiiigqmaslsyft
illilfptigtlenkmlny

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >3l71S (S:)
aaratvagggrlmdrirkwyynaagfnkyglmrddtlyedddvkealkrlpedlynermf
rikraldlslkhrilpkeqwvkyeedkpylepylkevirerlereawnkk

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71S (S:)
grlmdrirkwyynaagfnkyglmrddtlyedddvkealkrlpedlynermfrikraldls
lkhrilpkeqwvkyeedkpylepylkevirerlereawnkk

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >3l71T (T:)
gihfgnlarvrhiityslspfeqraipnifsdalpnvwrrfssqvfkvappflgayllys
wgtqeferlkrknpadyendq

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71T (T:)
ihfgnlarvrhiityslspfeqraipnifsdalpnvwrrfssqvfkvappflgayllysw
gtqeferlkrknpadyend

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >3l71U (U:)
lrgsgeeeeeelvdplttirehceqtekcvkarerlelcdarvssrshteeqcteelfdf
lhardhcvahklfnklk

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71U (U:)
elvdplttirehceqtekcvkarerlelcdarvssrshteeqcteelfdflhardhcvah
klfnklk

  • Chain 'V':
    No sequence available.

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >3l71W (W:)
allrqaysalfrrtstfaltvvlgavlferafdqgadaifehlnegklwkhikhkyease
e

    Sequence, based on observed residues (ATOM records): (download) 
    >3l71W (W:)
allrqaysalfrrtstfaltvvlgavlferafdqgadaifehlnegklwkhikhkyease